Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1498 ATGATACAGGAAGATCAAGGACAGTGTTCTTCTCAAGCGATCAATAACTACCACCAAGCCTATCAAGAGCAGCTTCTCCTTCAGCAACAGATGCAGCAGCAGCAGCAACAACAACAACAAAACAATGATATCTTTGGTGGAGGATTGAACATGTACCCTGGTGGTGAAGTTTCTCAAATCATGCATCATCATCATCATCAACCATGGTCTATGACTATGCCTCATCACCATCATCATCATCATCAGGTTCATGACCCTTTTCTTGTCCCTCCCCAAACTTCACCCTATGCAAGCTTGTTCAACAGAAGGGGTCCTTCTCTTCAGTTTGCATATGATCATGGTTCATCTTCTGACCATCTTAGGATCATATCTGAATCCTTTGTTGGACCGGTGGTTCAACCCGGTTCAGCACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCTAAGCTGCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATCCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCACTGATAGCAGAAACGAGTCCGGTTCCAACAGAAGCTGATGAGTTAACAGTAGTGGACGAAGCTGATGAAGATGGAAACTCAGTGATCAAAGCCTCTTTGTGCTGCGAAGATAGGTCAGATCTGTTCCCTGAACTCATCAAGACCTTGAAAGCGTTGAGGCTAAGAACGCTTAAGGCTGAGATAACAACGCTTGGTGGGCGCGTCAAGAACGTATTGTTCATCACTGGAGAAGAAACAGACTCATCAAGCAGTGAGGACCATAGCCAGCAACAACAACAGTGCTGCATTAGCTCAATACAAGAAGCGCTTAAGGCTGTGATGGAGAAGAGCGTTGGGGATCATCATGAGTCTGCTTCTGCGAATATTAAGAGGCAAAGGACCAATATAATATCAATGTCCTAG 1044 0.4579 MIQEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQQQQQQQNNDIFGGGLNMYPGGEVSQIMHHHHHQPWSMTMPHHHHHHHQVHDPFLVPPQTSPYASLFNRRGPSLQFAYDHGSSSDHLRIISESFVGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVVDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEETDSSSSEDHSQQQQQCCISSIQEALKAVMEKSVGDHHESASANIKRQRTNIISMS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1498 347 PANTHER TRANSCRIPTION FACTOR BHLH30 75 345 IPR045847 GO:0003700|GO:0006355
Gso20g1498 347 PANTHER TRANSCRIPTION FACTOR BHLH30 75 345 - -
Gso20g1498 347 MobiDBLite consensus disorder prediction 326 347 - -
Gso20g1498 347 CDD bHLH_AtAIG1_like 155 231 - -
Gso20g1498 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 216 IPR036638 GO:0046983
Gso20g1498 347 CDD ACT_UUR-ACR-like 246 299 - -
Gso20g1498 347 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Gso20g1498 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Gso20g1498 347 Gene3D - 155 216 IPR036638 GO:0046983
Gso20g1498 347 SMART finulus 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1498 Gso-Chr20 45502331 45505802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1498 10 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.108 9.74e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1498 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1498 - - gmx:100785826 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1498 20 45502331 45505802 Gso10g1847 10 45176801 45180130 GST