Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1494 ATGATGCCCCCTGAGCAAGAAACAACTATTGCAACAAACATTCCAGCCATCACAACCCGACAAGAGACCAGCTCGGTCCACCATGAATCAGAGGGTTCAAACACTAACAAAATCAAACCAAGTTTAGAATTGGATGATAATGGCATTCCTCCGCAGCAACAGACTCAGCCAACAACACCACCACCACCATCAAGATTTTCCGTTCTTCACCAATCCTTACGCCCCATTACCCTCAAATTTGAAGACGTATCCTACACTATAACCTTCGAAAGCCAAAAGAAGAAGGGTTGCGTCTTACGTAAAGAATCAAAGCTAAGAAGAAAAGTCCTCACCGGAGTGACTGGAGTAGCGAACCCCGGCGAGCTAACGGCAATGCTGGGTCCCTCCGGCAGCGGCAAGACGACCCTCTTAACCGCCCTGGCCGGAAGACTCGCCGGAAAAGTCTCCGGCACCATAACCTACAACGGCCACACCGACCCCACCTTCGTGAAACGCAAGGTAGGGTTCGTTCCCCAAGAGGACGTTCTCTACCCTCACCTCACAGTGTTGGAAACCCTAACCTACGCAGCGCTGTTGAGGCTTCCGAAGAGTTTGAGCAGAGAAGAGAAGAAGGAGCACGCGGAGATGGTGATCACGGAGCTAGGGCTAACACGGTGTCGTAATAGTCCCGTTGGAGGGTGCATGGCTCTGTTCCGTGGCATTTCGGGTGGGGAACGGAAACGGGTCAGTATCGGGCAGGAGATGTTGGTCAACCCGAGTTTGTTGTTTGTTGATGAGCCCACCTCGGGCTTGGACTCCACCACGGCCCAACTTATTGTGTCGGTGCTCCGCGGGCTCGCCTTGGCGGGTCGAACCGTCGTCACCACCATCCACCAGCCCTCCAGCCGGTTGTATAGGATGTTTGATAAGGTGGTCGTGTTGTCGGATGGGTACCCAATTTATAGCGGGCAGGCGGGTCGGGTCATGGACTATCTCGGATCCGTCGGATATGTCCCAGCTTTCAACTTCATGAACCCAGCAGATTTCCTTCTTGACCTTGCTAATGGGGTAGTTGCTGATGTCAAACATGATGATCAGATAGACCACCATGAGGATCAAGCTTCAGTCAAACAATCCCTAATGTCATCTTTTAAGAAGAACTTATATCCTGCTCTTAAAGAAGACATTCACCAAAACAATACTGATCCGTCAGCTCTTATATCAGGAACACCTAGACGCTGTGATAACCATTGGACCTCTAGCTGGTGGGAGCAATTCAGGGTGCTTCTTAAGAGGGGTTTACAAGAGAGGAGGCATGAATCTTTTTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTATCCATTCTCTCAGGACTTCTGTGGTGGCACTCTGATCCTTCACATGTACAAGATCAGGTTGGACTCCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCCTTCCCTCTGGAGAGGCCAATGCTAATAAAAGAAAGATCATCAGGGATGTACAAACTCTCCTCATACTATGCTGCTAGGATGGTGGGAGATTTACCAATGGAGCTAGTGCTTCCTACCATCTTTGTAACTATCTCCTATTGGATGGGTGGTCTCAATCCTTCATTGGTCACATTTGTGCTAACACTCTTGATCATGCTTTTCAATGTTCTAGTCTCTCAAGGCATAGGCCTAGCACTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACATCACTAGCTTCAGTGACCATGCTGGTATTTCTCTTGGCTGGTGGATACTACATTCAGCAAATGCCGGCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGCCACTACTGCTATAAACTACTAGTAGGAGTCCAGTATTCAGTAAATGAGGTATACGAGTGTGGACAAGGGTTGCATTGTAGGGTAAGAGATTTTCCTGCCATAAAGTGTTTGGAGCTTGAGGATACTATGTGGGGAGATGTGGCTGCATTGACTGTAATGTTGATTGGATACAGAGTTGTGGCATATCTAGCCTTGAGGATGGGGCAGCCTCACTGA 2049 0.4866 MMPPEQETTIATNIPAITTRQETSSVHHESEGSNTNKIKPSLELDDNGIPPQQQTQPTTPPPPSRFSVLHQSLRPITLKFEDVSYTITFESQKKKGCVLRKESKLRRKVLTGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGHTDPTFVKRKVGFVPQEDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVITELGLTRCRNSPVGGCMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLALAGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGQAGRVMDYLGSVGYVPAFNFMNPADFLLDLANGVVADVKHDDQIDHHEDQASVKQSLMSSFKKNLYPALKEDIHQNNTDPSALISGTPRRCDNHWTSSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPSHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYKLSSYYAARMVGDLPMELVLPTIFVTISYWMGGLNPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATSLASVTMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGQGLHCRVRDFPAIKCLELEDTMWGDVAALTVMLIGYRVVAYLALRMGQPH* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1494 682 MobiDBLite consensus disorder prediction 1 67 - -
Gso20g1494 682 Gene3D - 72 329 IPR027417 -
Gso20g1494 682 Pfam ABC-2 type transporter 291 355 IPR043926 GO:0140359
Gso20g1494 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 327 IPR027417 -
Gso20g1494 682 CDD ABCG_EPDR 75 316 - -
Gso20g1494 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 334 IPR003439 GO:0005524
Gso20g1494 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 49 679 - -
Gso20g1494 682 MobiDBLite consensus disorder prediction 1 53 - -
Gso20g1494 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 49 679 - -
Gso20g1494 682 Pfam ABC transporter 113 262 IPR003439 GO:0005524
Gso20g1494 682 SMART AAA_5 119 312 IPR003593 -
Gso20g1494 682 ProSitePatterns ABC transporters family signature. 234 248 IPR017871 GO:0005524
Gso20g1494 682 Pfam ABC-2 type transporter 417 623 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1494 Gso-Chr20 45387783 45392694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1494 108 310 Calmodulin-binding Proteins AT2G36910 30.332 1.37e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1494 K05681 - gmx:100783696 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1494 20 45387783 45392694 Gso10g1851 10 45273733 45278625 GST