Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1489 ATGACTGAAGAAAGTGCTGGAAACACAGTTGCAACCTCTATTACCCCATTCAATTGGTGGTATCTCCAGGCAAATTCTCTTTCTTCCTGGAACGATACTAATAGCACATGGAACAGCCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAAGCCTCACTGTTGAGTCCTCTCGCAGACTCATTGAGCCACCTGCTCCTTCCTCCAACGAGTTGATGGGAGAACATGCTTCAGATAATCAACTTTGGAGTCATGTTTTATCAGGTGTTGGATCAAACGGCGAGTTGCACAACGGCCAAGAAATTGGAGAGAACTTTCTGGATGCACTGTCATCCAAAAGCATGACAAGCACTATGTTTCAACCAGTGTGTGACTACTTGAAGAAACTTGATCATACAAGTTGGGAATATAATGGTCCAACTTCATTAAATAGCTTTGAGAAGCACTTAAATGGGTTCAGTGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAGTTATCCAATCTTGTAAGCACTTGGTCTATTGCTCCACCAGACCCAGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACATGTCCTTGAGTTCTAATTCCATGGATCATCACTTCCCACAATCTGAACACTTCAAGCAACCTTTTAGAGACTCCACATCATCATGCTCTCTTGGAGGAGCAAGTAGAAGTTCTGGAGTGATTCCTAATTGCTATGATCATGACATGAAGGTGAAGCAAGAGTATCATGCAAGTGAAGTGCCACCAGGAGCAGTATTTGGAAAAACATTGAATGCCAATGGATTCAATAGCCTTTCAGTGGGTGATAGTTGCAAACTCTACCATGGTATGCCCAATATTTCTTCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTAGATTGGGAAGGCCAGTTATTGGAGTCCATAGTCAAAAGCCTAGTATGAAGTACCTGAACGTATCTGAATCAAAGAAGCAAGGTCTTCAAACACCATCACCACCGATAAGAACTAATGTTAATGGAAAAGGGGAGGGGACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCTTCAGATGCAATGTTGAAAAAACCTAAGCAAGATACATCAACAGCTTCTTCTTCAAAGGCACCCAAAGTCAAGCTAGGGGACAAAATTACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTATTTGAAGGCTAACACTCACAAGGACCCATGGGGAAGCTTGGATAGAAAAGATAAGGAGGACACCAAGTTAGACCTTCGGAGCAGAGGTCTTTGTTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGACAGCAGTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1518 0.4163 MTEESAGNTVATSITPFNWWYLQANSLSSWNDTNSTWNSQPNPNSSSSCEEDISVSTSFTNASNHSSLTVESSRRLIEPPAPSSNELMGEHASDNQLWSHVLSGVGSNGELHNGQEIGENFLDALSSKSMTSTMFQPVCDYLKKLDHTSWEYNGPTSLNSFEKHLNGFSEAMIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNMSLSSNSMDHHFPQSEHFKQPFRDSTSSCSLGGASRSSGVIPNCYDHDMKVKQEYHASEVPPGAVFGKTLNANGFNSLSVGDSCKLYHGMPNISSCTRNFSDVISFNSRLGRPVIGVHSQKPSMKYLNVSESKKQGLQTPSPPIRTNVNGKGEGTTREVKKKRSEESSDAMLKKPKQDTSTASSSKAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANTHKDPWGSLDRKDKEDTKLDLRSRGLCLVPTSCTPLVYRDSSGPDYWTPAYRGCLYR* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1489 505 MobiDBLite consensus disorder prediction 362 381 - -
Gso20g1489 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Gso20g1489 505 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 491 - -
Gso20g1489 505 MobiDBLite consensus disorder prediction 338 361 - -
Gso20g1489 505 CDD bHLH_AtbHLH_like 392 441 IPR045239 -
Gso20g1489 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 450 IPR036638 GO:0046983
Gso20g1489 505 PANTHER TRANSCRIPTION FACTOR BHLH111 31 491 - -
Gso20g1489 505 MobiDBLite consensus disorder prediction 338 396 - -
Gso20g1489 505 MobiDBLite consensus disorder prediction 32 73 - -
Gso20g1489 505 MobiDBLite consensus disorder prediction 32 89 - -
Gso20g1489 505 Gene3D - 396 452 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1489 Gso-Chr20 45320313 45323618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1489 23 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.858 3.79e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1489 - - gmx:100527800 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1489 20 45320313 45323618 Gso10g1855 10 45328196 45331487 GST