Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1488 ATGAAAAGAAAGGGCAGGAGTTGTGACAACCAAGATGCCGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGACCAAATACTCATCAACTACGTTCAAGTCCATGGAGAAGGAAATTGGAGAGAGCTTTCCAAAAGAGCTGGTTTAAAACGACTTGGGAAGAGTTGCAGACTCCGATGGTTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATCATCAGGCTACATAGCCTCTTAGGGAATAGGTGGTCTCTTATTGCAGGACGATTACCCGGGCGAACAGATCATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAAAACCACAACTATAACAACCTTCCTGGTCATAACAACATTCCTATCAAATTAAGAATTGAATCTCCACGGTGCTCAAAAAATTCATTGGGTATTGTTATTGATCCTACAAAATCCTCTCACCCAGTGACGATTAAGTCAATGAGCTGCACCGAGGTTATGATGCCAACGCGAACAGTCAATGATTTTACAACAAGTTGGGATAAAAACCCTTTTGCATCGACCCCACAAGATGGCCATGGTCATTGCTCAGAAGGTTTCCTCAAACACTTTGATATTAGTGACGTATTAATGCCATACGAGGATTGTCGTTTTAATGAATATGCTTGTGTCGAAGTACCCCAACATTTTGGAGATGAAGCCTACAAGGTTATTGATGCGGTGGGTGAAACACGGTATGATAATTGGAAGATTGATGACTATTTTCCACTAGACTATGATGTAGGTTTTTCTTTATTTTAA 819 0.4054 MKRKGRSCDNQDAVNRGPWSAEEDQILINYVQVHGEGNWRELSKRAGLKRLGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDHEIKNYWNTYLRKKVEQNHNYNNLPGHNNIPIKLRIESPRCSKNSLGIVIDPTKSSHPVTIKSMSCTEVMMPTRTVNDFTTSWDKNPFASTPQDGHGHCSEGFLKHFDISDVLMPYEDCRFNEYACVEVPQHFGDEAYKVIDAVGETRYDNWKIDDYFPLDYDVGFSLF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1488 272 Gene3D - 72 134 - -
Gso20g1488 272 CDD SANT 73 114 IPR001005 -
Gso20g1488 272 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gso20g1488 272 SMART sant 68 116 IPR001005 -
Gso20g1488 272 SMART sant 15 65 IPR001005 -
Gso20g1488 272 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Gso20g1488 272 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso20g1488 272 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso20g1488 272 CDD SANT 18 63 IPR001005 -
Gso20g1488 272 Gene3D - 16 68 - -
Gso20g1488 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso20g1488 272 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 270 - -
Gso20g1488 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso20g1488 272 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 270 - -
Gso20g1488 272 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1488 Gso-Chr20 45309914 45311689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1488 1 118 MYB Transcription Factor Family AT3G13540 66.102 6.97e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1488 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1488 K09422 - gmx:547459 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1488 20 45309914 45311689 Gso10g1856 10 45350054 45351906 GST