Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1487 ATGGGAAGAAAGGCCAACTGTGACAATCAATATGCTATGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTTATGAACTACGTTCAAGTCCATGGAGAAGGAAAATGGAGAGAGCTTTCCAAAAGAGCAGGCTTGAAAAGATGTGGGAAGAGTTGTAGACTCCGATGGCTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATTATTAGACTGCATAAGCTCTTAGGGAATAGATGGTCTCTAATTGCGGGACGCTTACCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATACTTATTTGAGAAAGAAGGCAGAGCACAAGCATGACAAAATTCCTAGCCATAACGATAACATTCCTATCAAATTAAGAATTGAATCTCCGGGTTGCTCAAAAAATTCCTTTGGTAATGTTCTTGATCCTACAAAATCCCCTCACCCAATGAGGTGTACCAAGGTTATGATGCCAGTCAATGATTCAGTCAACACAACGAATTTGATTACAACGAGCTGGGACAATCATAACCCTTCTTCTGCATCCATGCAACTAGATGACTATAATCATTGCTTAACAGGTGTCCTCCAAGAATTTGACATCAGTGACTTGTTAATGTCGTATGAGGATGATTTTCGTTTTAATGGATATGCTTGTGTCGAAATACCCCAACATATTTTTGAAGATGAGACTTGCAGGCTTGATGATTCGTTGGGTGAAGAAGCATGGTATGAGAATTGGAAGAATGACCCCTATTTTCCACAAGATCAAGATATGGGTTTTTCTTCCTTTTAA 825 0.3939 MGRKANCDNQYAMNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKAEHKHDKIPSHNDNIPIKLRIESPGCSKNSFGNVLDPTKSPHPMRCTKVMMPVNDSVNTTNLITTSWDNHNPSSASMQLDDYNHCLTGVLQEFDISDLLMSYEDDFRFNGYACVEIPQHIFEDETCRLDDSLGEEAWYENWKNDPYFPQDQDMGFSSF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1487 274 Gene3D - 15 67 - -
Gso20g1487 274 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso20g1487 274 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso20g1487 274 CDD SANT 72 113 IPR001005 -
Gso20g1487 274 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Gso20g1487 274 Gene3D - 71 133 - -
Gso20g1487 274 SMART sant 14 64 IPR001005 -
Gso20g1487 274 SMART sant 67 115 IPR001005 -
Gso20g1487 274 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso20g1487 274 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 273 - -
Gso20g1487 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso20g1487 274 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 273 - -
Gso20g1487 274 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso20g1487 274 CDD SANT 17 62 IPR001005 -
Gso20g1487 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1487 Gso-Chr20 45299067 45300770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1487 7 116 MYB Transcription Factor Family AT3G13540 72.727 7.06e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1487 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1487 K09422 - gmx:100780809 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1487 20 45299067 45300770 Gso10g1857 10 45358455 45359623 GST