Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1478 ATGGGTGGGAGCGAGAGCTCGAAGGGTGTGGTTATGGGTCGTTTGGTTGAGTGCATCAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAACTTGTGCAAGAGGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTTTGAGTCCTCTCTTTGAGGAATTGAAGGATGGTGATGAGTCCCTCAGCGATGAACAGCTTCAAAGCTTTGAGTCTCTCTTTGTTGCTTTGGATTCAGCTAAGACCCTTTTGAAGGATGCGAACCAAGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATACAGCAGATAAGTTCCAAAAAGTAACTGAAAAAATTGAAGCTGTGCTCAGTGAAATTCCTTACTGCAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATATACAACTAGACCTAGATATGGCAGTGGCGCAAAAAGAAAAGGACCCTGATCCTGCTGTACTGAAGAGACTTTCTGAGAAGTTGCATCTAAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACCTGAATTGTTGATCACAAGTGGTGGAGAACTAGGCGACTCTTTTGAAATGATCACATCCCTTCTCAGCAAACTGAGGGAATGCGTGCTCACAGAAAATCCTGAAGTTGGCACTGGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATAGTCTCCACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAAAGCAATGGCATTGAGCTACCAAAGAAGCAAGGGAGCTGTAGAACAAAGAAATGTGGTGGCAGCAGTCTTTCAGATTGTGATCGAACTGCTATTAGTGCTTTATTGGATAAACTAATGAGTAACGATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCAGGCTGTTGGCTAAGAGGAATGCAGACAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCACCTCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACTCAGGAGCACGCTGTTACAGCACTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAATGCTGGAGCCATACCGGATATTGTAGATGTACTGAAAAATGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTCAGTTTATCGGTTCTAGACGAGAATAAGGTGCAAATAGGTGCAGCTGGAGCTATCCCTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAACCTATCTATTTATCAGGGAAATAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGTCCCACTGATACAGTTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATTATGGCAATCCTTGCAAGCCACCATGAAGGCCGGGTAGCGATTGGTCAGGCCGAGCCAATTCCTATTCTTGTTGAGGTTATACGAACCGGCTCTCCACGCAACCGAGAGAATGCTGCTGCTGTCTTGTGGTCACTATGCACTGGAGATCCGCTGCAATTAAAACTAGCAAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTGTCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGCATATTGGAACTCTTGCAGCGAATGGAAGGGGTTGATAATCTGCAGAATTCATAG 1896 0.442 MGGSESSKGVVMGRLVECIKEISGLPECQNLCKRVYGNLVRRVKLLSPLFEELKDGDESLSDEQLQSFESLFVALDSAKTLLKDANQGSKLYQALRRNDTADKFQKVTEKIEAVLSEIPYCKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDLDMAVAQKEKDPDPAVLKRLSEKLHLRTINDLRKESSELPELLITSGGELGDSFEMITSLLSKLRECVLTENPEVGTGECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSLSDCDRTAISALLDKLMSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVVPLIQFLKDAGGGMVDEALAIMAILASHHEGRVAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMEGVDNLQNS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1478 631 Gene3D - 11 120 IPR036537 GO:0007166
Gso20g1478 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Gso20g1478 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Gso20g1478 631 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Gso20g1478 631 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Gso20g1478 631 PANTHER U BOX DOMAIN-CONTAINING 12 623 - -
Gso20g1478 631 SUPERFAMILY RING/U-box 246 322 - -
Gso20g1478 631 CDD RING-Ubox_PUB 251 293 IPR045210 -
Gso20g1478 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Gso20g1478 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Gso20g1478 631 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 623 - -
Gso20g1478 631 SUPERFAMILY ARM repeat 343 619 IPR016024 -
Gso20g1478 631 Gene3D - 340 424 IPR011989 -
Gso20g1478 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Gso20g1478 631 SMART arm_5 375 415 IPR000225 GO:0005515
Gso20g1478 631 SMART arm_5 457 497 IPR000225 GO:0005515
Gso20g1478 631 SMART arm_5 416 456 IPR000225 GO:0005515
Gso20g1478 631 SMART arm_5 539 579 IPR000225 GO:0005515
Gso20g1478 631 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Gso20g1478 631 Gene3D - 425 521 IPR011989 -
Gso20g1478 631 Gene3D - 522 629 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1478 Gso-Chr20 45140334 45144569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1478 11 625 U-box Gene Family AT3G54850 66.613 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1478 - - gmx:100777452 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1478 20 45140334 45144569 Gso10g1872 10 45532168 45536700 GST