Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1475 ATGAATAACTCTGTTTCAGAAAACAGTTTCATCATTGAGAGTGATGAAGAAGATGAGGAGAAGGATTTGAATAAAGGTGGAGTTGATGGAAACGATTCTGATTCTTCCAATTACTCAAATGAAAACCCTCCACAGCGAAAGCCCAGTTCTTACAACATTTCATGGCCTCAGAGTTACAGGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATATTTGGGCACACCTTCTCTGTCAAGACTAAGCAGTTCTTTTCTTTCTACATCATTGACAAGGAGGCACACTCCTGAAGCACTTCCTTCAGTGGCAAAGCCTCTGATACAAGACACAGAAGATGAGCAGCATCAGAGACGTAGCTCTCACACCTTGCTTCCTCCTCTTCCTTCTAGAAGGTCTTCTTTGATTAAGAAGGATTCCAAGGTTATTCATCATGAAGTTCCCTCTGGCCACTGCTCTTTTGGACAAGCTGTGCTTAATGGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTATTTCATTTTATACTGGGCTGCTTTTGCGTTCCTGCTTGGACAGTGAACCTGAGCTTGAGACATACCCTGATATTGGCCAAGCTGCTTTTGGTACTACTGGACGTATTGCCATTTCAATAGTATTATACGTGGAATTATATGCTTGTTGCATTGAATATATAATTTTGGAGGGCGACAATTTGTCTTCCTTATTTCCAAGTGCACACTTAAATTTGGGTGGAATTGAACTGAATTCACATACATTGTTTGCTGTGATTACTACCTTGGCTGTTCTTCCTACTGTTTGGCTCCGTGACCTAAGTATTCTAAGTTACATATCTGCTGGTGGAGTTGTTGCATCAATTTTAGTGGTTCTCTGCCTATTATGGGTTGGCATAGAGGACGTAGGCTTTCATAGCAAAGGGACCACACTCAATCTTGCAACTCTTCCTGTTGCTGTTGGTCTTTATGGTTACTGCTACTCTGGACATGCTGTGTTCCCAAACATTTATACATCCATGGCAAATCCAAACCAATTCCCTGTAGTCCTCTTAGCATGTTTTGGAATTTGTACCTTGTTGTATGCTGGAGCTGCTGTATTGGGATACACAATGTTTGGAGAAGCTATTCTGTCTCAGTTCACTCTTAACATGCCTAAAGAATTGGTAGCAACCAAGATTGCTGTCTGGACTACGGTGGTTAATCCATTTACCAAGTATGCGTTGACTATATCCCCAGTGGCAATGAGTCTGGAGGAGTTGATACCATCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGGTTGGTACTTTCTACCCTGGTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTTACTTTGATACTACCCTGTGCTTGTTTCCTAAGAATCTTGCGGGGCAAAGTGACACGAACACAGGCAGCACTTTGCATTACAATTATCACAGTAGGTGTTGTATGTTCTGCTTTTGGATCATACTCCGCCCTTGCCGAGATTGTGAAGAGTTTGAGGGGATGA 1635 0.4165 MNNSVSENSFIIESDEEDEEKDLNKGGVDGNDSDSSNYSNENPPQRKPSSYNISWPQSYRQSIDLYSSVPSPNIGYLGTPSLSRLSSSFLSTSLTRRHTPEALPSVAKPLIQDTEDEQHQRRSSHTLLPPLPSRRSSLIKKDSKVIHHEVPSGHCSFGQAVLNGINVLCGVGILSTPYAAKVGGWLGLSILVIFAIISFYTGLLLRSCLDSEPELETYPDIGQAAFGTTGRIAISIVLYVELYACCIEYIILEGDNLSSLFPSAHLNLGGIELNSHTLFAVITTLAVLPTVWLRDLSILSYISAGGVVASILVVLCLLWVGIEDVGFHSKGTTLNLATLPVAVGLYGYCYSGHAVFPNIYTSMANPNQFPVVLLACFGICTLLYAGAAVLGYTMFGEAILSQFTLNMPKELVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHAKSYLYSIFIRTGLVLSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCACFLRILRGKVTRTQAALCITIITVGVVCSAFGSYSALAEIVKSLRG* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1475 544 MobiDBLite consensus disorder prediction 113 135 - -
Gso20g1475 544 MobiDBLite consensus disorder prediction 29 53 - -
Gso20g1475 544 Pfam Transmembrane amino acid transporter protein 156 533 IPR013057 -
Gso20g1475 544 PANTHER - 26 541 - -
Gso20g1475 544 PANTHER OS05G0424000 PROTEIN-RELATED 26 541 - -
Gso20g1475 544 MobiDBLite consensus disorder prediction 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1475 Gso-Chr20 45055056 45062416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1475 1 477 Amino Acid or Auxin Permease AAAP Family AT2G39130 69.278 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1475 K15015 - gmx:100775840 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1475 20 45055056 45062416 Gso20g1475 20 45055056 45062416 ECH
Gso20g1475 20 45055056 45062416 Gso10g1875 10 45624427 45633193 GST