Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1471 ATGTGTAGGTGGAGCATTAAGTCAATGCATTTGAGGGTGCCCATTGTGGTGTTGAGCTTGTTCCTTGGGATGATGCAGTTGCCGTGCCAAGAAGTGAATGACTATGACCAAATCGATAGCCCTGCTGTTCTTCCCCTCGTTACTCAGCTTGTCTATAGTCAAATCTCCAATTTGACATCAATACTCAGTCAGGAAATAAGCAAAGAGTCCACTTTTTGTATCAAAGATCCGGATGCTGATTGGAATCAAGCATTTAATTTTTCATCTGATTTGGGCTTCTTGGCGTCTTGCATTAAGAAGACTAGAGGAGATATTGCAAAACGTTTGTGTACAGCAGCAGAAGTGAGGTTTTTCTTAAATAGTTTGTTGGGAAAATCTGTAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACGTCATGGGTCTCTGGTTGTGAGCCAGGATGGGCCTGTAGTGTTCCCTCAAGCCAGAAGGTTGACCTTAAAAATTCAAAGGAGATACCTGCAAGAACTTCGAATTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACCATGCCCTTTAGGTTCTTATTGCCCTCTTGCTACACTGAATAAAACAACTGGCATTTGTGAACCATATCTTTATCAGCTGCCTCCAATGCAGCCAAACCATACCTGTGGTGGAGCAAATGTTTGGGCTGATGTTAGTAGCAGTAGTGAGATATTTTGCTCAGCTGGATCATACTGCCCAACAACAACAAAAAGAATTCCTTGCAGTAGTGGGCATTACTGCAGGATGGGCTCCACATCTGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACAGCAACCCAAAATATGCATGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAATTGTTCTGACCAAGTTCTAACTACTAGGGAAAGAAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCACGCCAAAGATGGCAATTTGCAAAAGATGCCACTAAGAAGGGTGCAATGGGGCTGCAAGCTCAGCTATCACGCACCTTCAAGAAGGATGTGGCAAATCTGGAAAAAGTTAAAATTTTGAATCAAGCAACTTCTGAAGCAGATATTGAATTGTTGTCACATTCAGGACCTACAACTTCAAGCATGGTTGCAAGTTCATCTCTGGCGCCAAAGGAAAAGGGAAAAGAACCTAATGGTCTTATGCAGATAATACATGAAATTGAAAATGATCCAGATATTAATGACCACCTTCATACAGAAATAGAAACCAGAGATACAGGTGTTAGAGCAAATGCGCCAAAGGGAAAACAACCACATACTCATAGCCAAATTTTTAAGTATGCATATTCTCAACTTGAAAAAGAGAAGGCTGAGCAACAAGAAAACAAGAAGCTTACCTTCTCGGGGGTAATTAAAATGGCTACAAACACTGAAAAAAGGAAAAGGCCTTTAATGGAGATTTCTTTCAAGGATCTGACTCTTACATTGAAAGCTCAAAACAAACACATATTGAGATATGTTACTGGGAAAATTAAACCTGGCCGCATCACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCCGGAAAGGCATTGGGATGCTCAGTCACTGGTTCAATTTTTATAAATGGAAGGAATGAATCAATCCACTCCTTTAAGAAAATTACTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAACCTAACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCTGCTGACTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATAGAATTCTTGGGGCTTCAATCTGTGCGCAATGCCTTGGTTGGAACTGTGGAAAAAAGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCGCTCTTGATCTTGGATGAACCCACATCTGGCTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGCGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTCAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCAGGTCTGGGGATCAATATTCCGGAGCGGATTAATCCTCCTGATTACTTCATTGACATTTTGGAGGGCATAACAACACCTGGTGGAAGCTCAGGACTCAGTTATAAAGAGCTGCCAGTTAGATGGATGCTTCATAATGGATATCCAATTCCTCTTGATATGAGGCAGAATGCAGTTCAATTTGATATGTCCCAGAGTGTAAATTCAGCTAATGAAATAGATCCCAATGGATCTGGTCATGTCGGTAAAACCTTTGCCGGAGAATTATGGCAAGATATGAGAAACAATGTGGAACTGAAGAGGGAGAAGATAAGACTCAATTTTTTTAAATCCAAGGATTTATCTAACCGGAAAACTCCTGGTGTTTTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGACTACGAGAAGCTAGGATCCAAGCCATTGATTATCTTATTTTGTTACTTGCTGGAGCCTGCTTAGGATCACTTACCAAATCAGGTGACCAAACATTTGGTGCAGCTGGGTACACCTATACGGTGATTGCTGTATCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTCCTCTCCAAAGACACAATTGATCTTTTCAATACACTGATCAAGCCTGTGGTGTATCTTTCTATGTTCTATTTCTTCACCAATCCGATATCAACTTTTGCAGATAATTATGTTGTGCTGCTTTGTCTTGTATACTGTGTCACTGGCATAGCCTATGCATTGTCCATATTTTTTGAACCTGGCGCAGCCCAGCTGTGGTCAGTACTTCTGCCAGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAGTGTTGAAGAATATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCATTAGTTGTTGCAAATGCTGAAAGGTATCAGGGAGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAAGTGGCTACAATCTTCATGATTGGAGTTTGTGCATATCCATACTCATTCTTATGGGTGTAATTGCCCGGGCTATAGCATTTTTCTGTATGGTCACCTTCCGAAAGAAGTAA 3348 0.4125 MCRWSIKSMHLRVPIVVLSLFLGMMQLPCQEVNDYDQIDSPAVLPLVTQLVYSQISNLTSILSQEISKESTFCIKDPDADWNQAFNFSSDLGFLASCIKKTRGDIAKRLCTAAEVRFFLNSLLGKSVSANYLKPNKNCNLTSWVSGCEPGWACSVPSSQKVDLKNSKEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHTCGGANVWADVSSSSEIFCSAGSYCPTTTKRIPCSSGHYCRMGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANARQRWQFAKDATKKGAMGLQAQLSRTFKKDVANLEKVKILNQATSEADIELLSHSGPTTSSMVASSSLAPKEKGKEPNGLMQIIHEIENDPDINDHLHTEIETRDTGVRANAPKGKQPHTHSQIFKYAYSQLEKEKAEQQENKKLTFSGVIKMATNTEKRKRPLMEISFKDLTLTLKAQNKHILRYVTGKIKPGRITAVMGPSGAGKTTFLSALAGKALGCSVTGSIFINGRNESIHSFKKITGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNALVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGSAKKVEEYFSGLGINIPERINPPDYFIDILEGITTPGGSSGLSYKELPVRWMLHNGYPIPLDMRQNAVQFDMSQSVNSANEIDPNGSGHVGKTFAGELWQDMRNNVELKREKIRLNFFKSKDLSNRKTPGVFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGSLTKSGDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDLFNTLIKPVVYLSMFYFFTNPISTFADNYVVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQPKDSKVLKNIANLCYSKWALQALVVANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIARAIAFFCMVTFRKK* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1471 1115 ProSitePatterns ABC transporters family signature. 649 663 IPR017871 GO:0005524
Gso20g1471 1115 Pfam ABC transporter 527 677 IPR003439 GO:0005524
Gso20g1471 1115 Gene3D - 506 743 IPR027417 -
Gso20g1471 1115 Pfam ABC-2 type transporter 706 1115 IPR043926 GO:0140359
Gso20g1471 1115 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 508 749 IPR003439 GO:0005524
Gso20g1471 1115 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 1112 - -
Gso20g1471 1115 SMART AAA_5 534 726 IPR003593 -
Gso20g1471 1115 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 36 1112 - -
Gso20g1471 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 741 IPR027417 -
Gso20g1471 1115 MobiDBLite consensus disorder prediction 396 416 - -
Gso20g1471 1115 CDD ABCG_EPDR 506 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1471 Gso-Chr20 45014464 45026198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1471 532 727 Calmodulin-binding Proteins AT2G36910 24.651 9.17e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1471 - - gmx:100775464 2162.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1471 20 45014464 45026198 Gso20g1471 20 45014464 45026198 ECH
Gso20g1471 20 45014464 45026198 Gso10g1878 10 45660174 45668673 GST