Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1468 ATGTGCAAATCCAAAAAGAGCACAAGCGTGATCCAACCCAGAACCCGAACAAACACAAAAAGGACAAATTCCCCTCGTCCTCACCGAACACGAACCCCAACATCGTCTTCCTCGAACTACGAAACCTCCACGAGCGATGTTCCAATCACAGAATCAAGAAGCTACGTATTCGAAAACAACAACAACTCCAACACCAACTACGACTTCGAGTGGTCCAAAACCTCTTCAATTTCAAGCCGCGCTTCTCTATCAAGTCTCAGAGACACGCTCCCTGAAAACCCTAACATCTACCACTTCTCCGAGATCGCCGCCGCAACCGCCAATTTCTCTTCCCCGCGCCTCTCTTCTTCCTCCTGGCGCTGCGTAATTCGCCAACGCGACGTCGTCGTTTCGCGCCGCAACTTCCGCCAACAAATTGATCTTCCGGAGCTCAGTCGCCGCCTCGCGCTCATCTGCCGGAGCCACCACAGCAGCCTCGTGAAACTCCTCGGCGCGTCGGTCTCCGGCGCCGTCATCTTCCTCGTCTACGAGTTCGTCCCCGGCGCCAGCCTCGCCGACTGCCTCCGCAACCGCCGGAACCCTAGCTTCACCGATCTCAAGACGTGGATCTCTCGGATGCAGATCGCATCCGACGTGGCGCACGGTCTCGATTACATCCACAATTTCTCCGGCTCCGGTTCGGATTCCGAAGCCGGATTCGTTCACAATCATATCAAGATTTCGAGCATTGTAATCACGGAGGAGAATCTGCGCGCGAAAATCTGCCACTTCGGCGCGTCAGACCTCTGCGGCGAGGCCGTCGCCGGCGAAGGCGAGCCTTCCGGCGGCCGGATGGTGAGGATCGAGGGGAGGAGGGGCTACATGGCGCCGGAGTTTCAGATCAGCGGCCTCGCGACGAAGAAGACCGACGTGTACGCCTTCGGAGTGGTTGTTTTGGAGCTGCTGAGCGGGGAAGAGGCGTTGAAGTTCGAATTCAACGACGACGGAGGTTATCGGAGGATTAGCGTGGTGGAGACGGCGAAGATTGCGGCGGAGGTGAACGGCGGCGTGAGGAAGTGGGCGGATAAGAGGCTGAGGGATTCGTTTCCCGTGAAAGTTGCGGAGAGAATGCTTCGGGTCGGGTTGGAGTGTGTTTGCGATGACCCGAATGAGAGACCCGACATGGGTCGGGTCTCGAATGAGGTGTCGAAGCTGTATTTGGAATCGAAGGAGTGGGATGAAAAAATGGGAACCGATATTGACTTGTCGGTGTCGTTGGCCCCACGGTGA 1269 0.5682 MCKSKKSTSVIQPRTRTNTKRTNSPRPHRTRTPTSSSSNYETSTSDVPITESRSYVFENNNNSNTNYDFEWSKTSSISSRASLSSLRDTLPENPNIYHFSEIAAATANFSSPRLSSSSWRCVIRQRDVVVSRRNFRQQIDLPELSRRLALICRSHHSSLVKLLGASVSGAVIFLVYEFVPGASLADCLRNRRNPSFTDLKTWISRMQIASDVAHGLDYIHNFSGSGSDSEAGFVHNHIKISSIVITEENLRAKICHFGASDLCGEAVAGEGEPSGGRMVRIEGRRGYMAPEFQISGLATKKTDVYAFGVVVLELLSGEEALKFEFNDDGGYRRISVVETAKIAAEVNGGVRKWADKRLRDSFPVKVAERMLRVGLECVCDDPNERPDMGRVSNEVSKLYLESKEWDEKMGTDIDLSVSLAPR* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1468 422 Pfam Protein tyrosine and serine/threonine kinase 137 393 IPR001245 GO:0004672|GO:0006468
Gso20g1468 422 Gene3D Transferase(Phosphotransferase) domain 1 180 417 - -
Gso20g1468 422 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g1468 422 SUPERFAMILY Protein kinase-like (PK-like) 133 395 IPR011009 -
Gso20g1468 422 MobiDBLite consensus disorder prediction 1 47 - -
Gso20g1468 422 ProSiteProfiles Protein kinase domain profile. 108 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1468 422 Gene3D Phosphorylase Kinase; domain 1 70 178 - -
Gso20g1468 422 PANTHER OS09G0572100 PROTEIN 1 422 - -
Gso20g1468 422 PANTHER OS09G0572100 PROTEIN 1 422 - -
Gso20g1468 422 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1468 Gso-Chr20 45000464 45002269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1468 92 410 Receptor kinase-like Gene Family AT1G51940 32.530 3.92e-45 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso20g1468 PK_Tyr_Ser-Thr 3.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1468 - - gmx:100820374 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1468 20 45000464 45002269 Gso20g1468 20 45000464 45002269 ECH
Gso20g1468 20 45000464 45002269 Gso10g1881 10 45681167 45686264 GST