Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1467 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCCCTGGCTCCGGAATTTCGCCCTACAGACACTGAATTTGCTGACCCAATTGCTTATATTTCGAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATACCACCGTTGCCCAAACCTTCAAAAAAATATGTTTTTTCCAATCTGAATAGGTCACTCTTGAAGTGCCCTGATTTGGGTCCAGATAATAGTTCATTAGGTGTTTGTAATTCATTGAAAACCGGTTATGGGGATGGTAGTAGTGACGGGGTGTCGCGAGCCGTGTTTACTACAAGGCATCAAGAACTGGGGCGGAGTCAGAATGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCGAAAAGTGTGCTAGGTTCAGTGAAGGATGTTTCTCCTCTGGTTATAGAGTCTCTGTTTTGGAAGGCAACTTTAGAGAAGCCTATATATGTGGAGTATGCCAATGACGTTCCTGGGTCTGCTTTTGAAGAGTCCAAGGGCCAATTTCATTATAGTCATAGAAGGCAAAGGAAAAAGACTTATTATAAGAGTAGGTTAGATAGCTCTGATTGTAAACAAACTGAAATGGGTTGCGTAAGAGATACCCAAACTGATGAGACTAAGGTTGCTTCTGTCCAAAGTCATGCAGGCACTTGTTTACAGATGAACAAATCAGCTACTATTGTGTCAACATTTTCATCAAATGATGATTCACAATCTTCTAAGGAAAAGAGTTCAGATGCCAGCAATGAAGTGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTGACACGTTTTATGCCGGATGATATTCCTGGCGTCACGTCACCTATGGTATACATTGGTATGCTTTTCAGTTGGTTTGCTTGGCATGTAGAGGATCACGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACCTGGTATGCTGTTCCTGGTGATTATGCCTTTGCTTTTGAGGAAGTCATTCGCACTGAGGGTTATAGTGGTAACATTGATCACTTAGCTGCTTTGAAACTTTTAGGTGAGAAAACAACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTTCAGGTTAACTCAGCACCCTGGTGAATTTGTTGTAACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACCCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGAGCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGCGTGCATAGTTCTCGTCTAAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTTATAGAAGACATGCTGCAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCTGATTTGCTGCCTGATTCCAGCAAAGATTTTCAGTTGCCTGATTTAACTTCTACTACTGGAACCTCTATGGCAGATATGTCAAATATTATTTCTGCAGAAAAGAGTAGTCATTATCTTCTTGATGAAATGAGTTTGTATATGGAGAATTTGACCAATTTAGATCTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTTGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACCAAGAAATTGATAATGGAACTTCTTCCTGATAATCATCATCTAGTTCAAGTTTCCTCTCTGGACTCTACTGCTTGCGTTAATAGTTCCATCTCAAGGGATCTTTCTGTTTCTGAACTCTCATCAGTAAAGGAGTTGCCAGATCAATCATTAAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAGTTTTTGAGGCCTCGGATTTTCTGCCTGGAGCATGCTGTTCAAATATCTGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATATGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTCTTATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGAAATTGTGTCCATGCAAGAAATAACTCTCCATCTAAACAAGTTCCTTGGATACTAGGGACACTGTTATATGATCAATGTCTTGCTTCAAAATCTTTAGCTTTAAATTGGCAGTCACGGAGATCTCGATCAAAAAGGTCAAGTTGTTTAGCTCAGACTAAACCATGTGACAACATTGAGAGAAAGGAGGATCAGTTGTATGGAAGAATAGATGATTTCCCTGCTGAAAAGAAGCTACTTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGGTGCTTCCCTGTTGCAAGCATGGTCTGTGAATTCCAAGAGAAGTCCAAAAATTTGTCAGCTACTTTGAGTGGGGATCATAATAATTGTGTTTCTAAAACTGAGCTTGAAACTGAGAATTTCAGGATTGATTGTTCATTGTTGTGTGTCTCTGCTTCTGCTGAAATGTCTCCAATGCATCCTGAAATCCAGATTGCTGAAGTGCCTGCTAGCACGAGATTAAATGATGCTAAGTCACAACCTTCCAATTCCATTCCTGATCGTACTTTAATGATTGAAGAAGTTGGAGCAGAGATTGAGAAGCAAAACATGCAGGAATCAGATGTAGACAGAAATAATGATTTAACACTCCGTCATTCTAAGATGCATTGCAATTCCAGTGTCTCAGAAATATGTGGCAAGGAGGGCCAAGATTGTCTGGACAAAAAATGTTCTAGCTCACTTACAAACACAACAGATAGACATATTGAAATGATTAGAAATTCTGAAATTACAGAAGCAGTTATCATTGATAGCAAGTGTGATAGCTTAACTTTGAATGGTGAAGGGCATCAAGAATATCAGTCTACCTGCAAAAGCAACAATGTGGAAGCGGCTTTATCACCTGCTTCATTGGTAAATCATTCTACACTGGCATCTGTGGTTGGAAGTTTCGAAAGTCCAAATAATAATTATACTGCAGAAAAAATTAGCAGTCTTATTTTCCTAGAAAAGGCAACTGAGGAAGAAATTGATTCTTTAAGTGAAAGGGACAAGGAACCTCTAATTGATGACAGACAAATTAGTGAACATACTCCAAAAGAAGTTTGTGAAGTTCGAAGAGAGCTTTATGCTTCTGCAGACTTGCATAGTACCGTAGTCTTGGATAGTGAGATGCAACATGAAACTCAGGGTGGAAAAGATAGCAGAAAGGAAATAAATCAGTCCACTCATGTTTCAGCAATTACAAGAGGGGAATATGCTGAAGGGTTGAATGATGAAGTGATTCCAAAGTCTGTGGAGCAGTGTCAGTTTGAAAATATGAATAAAATTACCATGGAACCTGTTTCTAGCTATGTTGCAAAAGGTGAAAATAAATGTGTAACTTCATCAGAATTAGGAGGTTCTGAAGTATTAGTGGAAACTTATCCTAAAGAAGACTCTTGTATTCAATTGATTTCAGATAAAGAAAAAGAAACGGAAATCCAGTCAGTGAGTAGAATTGATGAGGAATTTTGCTCTGGCACTGATACATCAATAGATGACTCTTCATCAATCCAGGAATGTTCTAAAATTGAGCAAGAGAGCTGTGTTACAGAAAACATAAATGGAATCAAAACCAATTTGTCACAAGATAATAGGGAGCTGGAAAGCTGCGAGTTCAGTACAGCAGTTCCCAGATCAAATGCTGGGAAGAATAGAAAGAGAAAAGTGAAACATACAACGAAGAACAAATCCAATTGTGACAACTTTATTAGAAGTCCGTGTGAGGGGCTGAGGCCAAGAGCTGGGAAGATTGCGGCTGACAAAAGTGGGGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAAAGGGCAAGGAGATCTTCTGAAGCTTTGGTTCCTCGCAAAAATAAAAAGGATGATGTTAAAAAGCCCCATAAGTGTGACCTTGATGGTTGCCGAATGAGTTTCAAGACTAAAGCTGAGTTACAATTGCATAAACGAAACCTTTGCCCACATGAGGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATAATGATGATAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCATATGCGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACAGGGCACCATGTGAAACCTCCTGCTTGA 4617 0.4035 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLGVCNSLKTGYGDGSSDGVSRAVFTTRHQELGRSQNVKKAKGTVQNPLSGVHKQVWQSGEVYTLEQFESKSKSFAKSVLGSVKDVSPLVIESLFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRQRKKTYYKSRLDSSDCKQTEMGCVRDTQTDETKVASVQSHAGTCLQMNKSATIVSTFSSNDDSQSSKEKSSDASNEVQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYSGNIDHLAALKLLGEKTTLLSPEVIVASGIPCFRLTQHPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLSMSFISRVPRTLLPGVHSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKKAVLWNADLLPDSSKDFQLPDLTSTTGTSMADMSNIISAEKSSHYLLDEMSLYMENLTNLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTKKLIMELLPDNHHLVQVSSLDSTACVNSSISRDLSVSELSSVKELPDQSLNKCNKCWNTSSKFLRPRIFCLEHAVQISEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHSAFDYNEVPLDTASPENLTLIDLAIDGEEHDECEDWTSKLGINLRNCVHARNNSPSKQVPWILGTLLYDQCLASKSLALNWQSRRSRSKRSSCLAQTKPCDNIERKEDQLYGRIDDFPAEKKLLQYSRRKFKSKQRCFPVASMVCEFQEKSKNLSATLSGDHNNCVSKTELETENFRIDCSLLCVSASAEMSPMHPEIQIAEVPASTRLNDAKSQPSNSIPDRTLMIEEVGAEIEKQNMQESDVDRNNDLTLRHSKMHCNSSVSEICGKEGQDCLDKKCSSSLTNTTDRHIEMIRNSEITEAVIIDSKCDSLTLNGEGHQEYQSTCKSNNVEAALSPASLVNHSTLASVVGSFESPNNNYTAEKISSLIFLEKATEEEIDSLSERDKEPLIDDRQISEHTPKEVCEVRRELYASADLHSTVVLDSEMQHETQGGKDSRKEINQSTHVSAITRGEYAEGLNDEVIPKSVEQCQFENMNKITMEPVSSYVAKGENKCVTSSELGGSEVLVETYPKEDSCIQLISDKEKETEIQSVSRIDEEFCSGTDTSIDDSSSIQECSKIEQESCVTENINGIKTNLSQDNRELESCEFSTAVPRSNAGKNRKRKVKHTTKNKSNCDNFIRSPCEGLRPRAGKIAADKSGVEINQVDKENQVAKRARRSSEALVPRKNKKDDVKKPHKCDLDGCRMSFKTKAELQLHKRNLCPHEGCGKKFSSHKYALLHQRVHNDDRPLKCPWKGCSMSFKWAWARTEHMRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA* 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1467 1538 MobiDBLite consensus disorder prediction 265 291 - -
Gso20g1467 1538 ProSiteProfiles Zinc finger C2H2 type domain profile. 1446 1475 IPR013087 -
Gso20g1467 1538 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1527 - -
Gso20g1467 1538 SMART cupin_9 293 462 IPR003347 -
Gso20g1467 1538 Pfam jmjN domain 17 50 IPR003349 -
Gso20g1467 1538 ProSitePatterns Zinc finger C2H2 type domain signature. 1508 1532 IPR013087 -
Gso20g1467 1538 SMART c2h2final6 1423 1445 IPR013087 -
Gso20g1467 1538 SMART c2h2final6 1476 1500 IPR013087 -
Gso20g1467 1538 SMART c2h2final6 1446 1470 IPR013087 -
Gso20g1467 1538 SMART c2h2final6 1506 1532 IPR013087 -
Gso20g1467 1538 ProSitePatterns Zinc finger C2H2 type domain signature. 1478 1500 IPR013087 -
Gso20g1467 1538 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1527 - -
Gso20g1467 1538 Gene3D Cupin 9 466 - -
Gso20g1467 1538 ProSiteProfiles Zinc finger C2H2 type domain profile. 1506 1537 IPR013087 -
Gso20g1467 1538 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Gso20g1467 1538 ProSiteProfiles Zinc finger C2H2 type domain profile. 1476 1505 IPR013087 -
Gso20g1467 1538 ProSitePatterns Zinc finger C2H2 type domain signature. 1448 1470 IPR013087 -
Gso20g1467 1538 Gene3D Classic Zinc Finger 1444 1532 - -
Gso20g1467 1538 SUPERFAMILY beta-beta-alpha zinc fingers 1486 1536 IPR036236 -
Gso20g1467 1538 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Gso20g1467 1538 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Gso20g1467 1538 SMART JmjN_1 15 55 IPR003349 -
Gso20g1467 1538 SUPERFAMILY beta-beta-alpha zinc fingers 1447 1483 IPR036236 -
Gso20g1467 1538 SUPERFAMILY Clavaminate synthase-like 293 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1467 Gso-Chr20 44987840 44997713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1467 1 946 C2H2 Transcription Factor Family AT5G04240 53.144 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1467 JmjC 6.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1467 - - gmx:100819845 3010.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1467 20 44987840 44997713 Gso20g1467 20 44987840 44997713 ECH
Gso20g1467 20 44987840 44997713 Gso10g1882 10 45690285 45700188 GST