Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1466 ATGGAATATTCAAAGGAAATTCATAGCAATGGCAATGCAAATGGTTCATTGAATCTTTGCAATGGTAGCACGGACCCACTTAACTGGGGCATGGCTGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGAATGGTGGAGGACTACCGTAACCCCGTGGTGAAGTTGGGTGGCAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCCGGCACCACGGCGGAGTTACGGTGGAGCTGGCCAAGGAGACCCGCCACGGTGTCAAGGCCAGCAGTGACTGGGTCATGGATAGCATGGTTAAGGGCACTGATAGTTACGGAGTCACCACAGGGTTCGGTGCAACCTCACATAGAAGAACCAAACAAGGTGCTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGTAATGGCACAGAATCTTGTCACACCTTACCTCACTCAGCTACAAGGGCAGCCATGTTGGTTAGGATTAATACCTTGCTTCAAGGATATTCAGGCATTAGATTTGAAATCATGGAGGCCATTTCTAAGTTTTTGAACCATAACATAACCCCATGTCTTCCTCTTCGTGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGACAAGTTCTTAATGCTAAAGAGGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTAAATGGCACTGCAGTAGGATCTGGCTTGGCTTCCGTGGTCCTTTTTGAGGCAAACTTACTTGTCATTCTTTCTGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAGTTCACCGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATCATGGAACATATATTAGATGGAAGCTCATATTGTAAGGCAGCACGGAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTACATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTAGCCATTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTAAATGACTTCTACAACAATGGTTTGCCTTCAAATCTAACAGCTAGTCGCAATCCGAGCTTAGATTATGGATTCAAAGGTGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGCGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGCTTAATTTCTTCAAGAAAGACAGCTGAAGCAATAGATATATTAAAGCTTATGTCATCCACTTTCTTAGTTGCTTTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTTAGGAATACCGTTAGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTCTGTGAGAAAGACTTGCTTAAAATTGTTGATCGTGAGTATGTCTATGCTTACATTGATGACCCCTGTAGTGCAACATACCCTCTGATGCAAAAATTGAGATTAGTCCTAGTTGATCATGCATTGCAAAATGGTGACAAAGAGGTGAATTCAAGTACCTCAATTTTCCAAAAGATTGGTGCCTTTGAGGAAGAGCTCAATGCCCTTTTGCCAAAAGAGGTGGAAAGTGCTAGGATTGAAGTTGAGAATGGAAATCCTGCCATTCCTAACCGAATTAAGGAATGCAGATCTTACCCATTATATAAGTTTGTTAGAGAAAATTTGGGTACAACTTTGCTAACAGGAGAGAAAGTCAAGTCACCTGGTGAGGAATTTGATAAGGTATTTACTGCATTGTGTGAAGGGAAGTTAATTGATCCTTTGTTGGACTGTCTAAAAGAGTGGAAGGGTGCTCCTCTACCAATATGCTGA 2154 0.4299 MEYSKEIHSNGNANGSLNLCNGSTDPLNWGMAAEALKGSHLDEVKRMVEDYRNPVVKLGGKSLTVSQVAAVATRHHGGVTVELAKETRHGVKASSDWVMDSMVKGTDSYGVTTGFGATSHRRTKQGAALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAISKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASVVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYCKAARKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVRNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVYAYIDDPCSATYPLMQKLRLVLVDHALQNGDKEVNSSTSIFQKIGAFEEELNALLPKEVESARIEVENGNPAIPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEEFDKVFTALCEGKLIDPLLDCLKEWKGAPLPIC* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1466 717 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
Gso20g1466 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Gso20g1466 717 PANTHER HISTIDINE AMMONIA-LYASE 16 717 IPR001106 -
Gso20g1466 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gso20g1466 717 Gene3D - 17 263 IPR024083 -
Gso20g1466 717 CDD PAL-HAL 61 527 IPR001106 -
Gso20g1466 717 SUPERFAMILY L-aspartase-like 25 717 IPR008948 GO:0003824
Gso20g1466 717 Gene3D Fumarase/aspartase (Central domain) 264 711 - -
Gso20g1466 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 717 - -
Gso20g1466 717 Gene3D - 530 651 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1466 Gso-Chr20 44969322 44975375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1466 25 717 Monolignol Biosynthesis Gene Families AT3G53260 83.405 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1466 K10775 - gmx:100818777 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1530 3 41205600 41209460 Gso20g1466 20 44969322 44975375 ECH
Gso20g1466 20 44969322 44975375 Gso20g1466 20 44969322 44975375 ECH