Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1465 ATGGGGTTGGTGAGCAGTTTCTTGGGGATTCTTGGTTTCGCCGTTGGAATACCTCTTGGCCTCTTTGTGGGGTTCTTTCTCTTTGTCTACTCAGAAACCAAACATGTCAAGGACCCTGTTGTTAGGCCTATAAGTGAATTAGGCCCAAATGCTTTGCAGGAACTTCTGCCCGAGATTCCTCTCTGGGTGAAGACGCCTGATTATGAACGAGTTGATTGGTTGAACAAGTTTTTATTGGATACGTGGCCTTTCTTAGATACGGCAATTTGTAAGATTATTAGAAGCAGGGCTCAACCAATATTTTCCGAATACATTGGCAAGTATCAGATCAAAGCGATTGAGTTTGATAAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTGGTATTAAAGTTTTAGAAACAAATGGAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGCAATCCAGAAATAGTGTTGTCGGTGTATGTGGCCTCTTTGAAGATCACCGTTCAGTTGGTAGACTTACAAATATTTGCAGCACCACGAGTTACTTTAAGACCTTTGGTGCCAACATTTCCATGTTTTGCAAATATTGTGGTATCTTTGATGGAGAAGCCTCATGTGGATTTTGGGATGAACGTATTAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAGGAAACAATAAAAAAACAAGTTGCAAACCTCTATCTCTGGCCTCAAACCCTGGAAATTCCTATTCTTGATGAATCATCGGTGGCAATAAAGAAGCCTGTGGGGATATTACATGTGAATGTGGTTCGTGCACAAAAGCTTTTAAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTTAAACTAAGCTTGACAGGAGACAAACTTCCAGCAAAAAAAACCACTGTCAAGAGAAAGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTGTTGTAAAGGATCCTCAATCTCAAGTTCTCCAATTACAAGTTTATGACTGGGACAAGGTTGGCGGACATGACAAGCTGGGAATGCAGTTAGTCCCTCTTAAAGTGTTAAAGGCGTATGAGAATAAAGAATTTACACTTGATTTACTCAAGGACACAAATCTCAATGAAACTCCAAGTAAGAAGCCTAGAGGTAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAAAGAAGATAGTAGCAAGTTTGGTGGACCTTCAGAAGGATATAGCAGGAAGGAAAGTGGAATTGATATCGTATCTGATGATGAGGTCCAAGAAGGAGCTGGTTTGCTTTCAATTGTGATCCAAGAGGCTGAAGAGGTTGAGGGGGACCATCACAACAACCCATTTGCAGTTCTGACCTTTAGAGGTGAAAAGAAAAGGACAAAGATGATGAAGAAAACTCGTCACCCGCGTTGGAATGAAGAATTCCAATTCATGCTGGAGGAGCCTCCTCAACATGAGAAGATACATATTGAGGTTATGAGCAAGAGGAAGAACTTTAGTTTTCTGCCAAAGAAATCATTGGGGCATGTGGAGATTAACCTAAGAGATGTGGTGCACAATGGTCACATTAATGATAAGTACCATCTAATAAATTCAAGGAATGGGGTGATGCATGTTGAGATAAGATGGAAGGTGGTTTAA 1638 0.4072 MGLVSSFLGILGFAVGIPLGLFVGFFLFVYSETKHVKDPVVRPISELGPNALQELLPEIPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFSEYIGKYQIKAIEFDKLSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAAPRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSIPGLYRFVQETIKKQVANLYLWPQTLEIPILDESSVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLKAYENKEFTLDLLKDTNLNETPSKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGIDIVSDDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKMMKKTRHPRWNEEFQFMLEEPPQHEKIHIEVMSKRKNFSFLPKKSLGHVEINLRDVVHNGHINDKYHLINSRNGVMHVEIRWKVV* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1465 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 542 IPR035892 -
Gso20g1465 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Gso20g1465 545 Gene3D C2 domain 256 411 IPR035892 -
Gso20g1465 545 ProSiteProfiles C2 domain profile. 407 526 IPR000008 -
Gso20g1465 545 SMART C2_3c 262 362 IPR000008 -
Gso20g1465 545 SMART C2_3c 427 525 IPR000008 -
Gso20g1465 545 Pfam C2 domain 427 527 IPR000008 -
Gso20g1465 545 Pfam C2 domain 261 359 IPR000008 -
Gso20g1465 545 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 544 IPR045050 GO:0008289
Gso20g1465 545 Gene3D C2 domain 427 545 IPR035892 -
Gso20g1465 545 PANTHER SYNAPTOTAGMIN-3 1 544 - -
Gso20g1465 545 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Gso20g1465 545 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Gso20g1465 545 PRINTS C2 domain signature 278 290 IPR000008 -
Gso20g1465 545 PRINTS C2 domain signature 305 318 IPR000008 -
Gso20g1465 545 PRINTS C2 domain signature 327 335 IPR000008 -
Gso20g1465 545 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Gso20g1465 545 CDD C2 263 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1465 Gso-Chr20 44943712 44949148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1465 260 344 C2H2 Transcription Factor Family AT4G05330 40.000 6.23e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1465 - - gmx:100819310 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1465 20 44943712 44949148 Gso20g1465 20 44943712 44949148 ECH
Gso20g1465 20 44943712 44949148 Gso10g1885 10 45730790 45736132 GST