Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1464 ATGGGAAGCAAGTGGAAGAAAGCCAAGGTGGCGCTCGGTCTCAACCTCTGCATGTTCGTTCCCAGAACCTTAGACGACGATTCGCCGCCGCACACGGTGGTTTCCGAGCGCCTCTCCGACGCCACTCTCCTCTCTCCGGCCAACTGGAGCACCAGCTCTTCCCGCCCAACCACACCGGTTTCCTCTTTTCACGGTTTGAAACTCTCCAAAAGTAGCAGCAAATCATCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCATTCCATTTCCAGTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAAGAAATACCCTTGTCAGGTCCCAGTTTGGATCCTATCCAGGGAAGAGTTTCACCTAGTCCAGTAAATTGGCCCCAAAATGATGCTTTGATGGCAGTGGTCCACCGTGTGCCTCTACCTCTACCTCATCCTCACCGAGATTTGAATAGGAGGCATGTTGTGCCACTTTATCAGGCTTCTGAGCCAGGCATATTTGACGATGATGAATCCTTAAATCATCAACATGCATTTTCTGAGAGAAGCACTTGTAATAAGAGTACTGAAGATACTGATGCTGCTGGAGCAATGGAGATTAAAACGTTCCCGGAAGTATCTGCTGCTCCAGGATCCAAGACTTATTCTAACTTCACGGTTTTGGTTCATCTCAAAGCTACTGCTGCCGCCACAGCAGCTGCAGCAAAAAGACAAAACCTTAGTAGAAACCAGACTAACTTGGCGCAGATTTCTCAGACTCCACGTGCCCCTGTCGACTTGGTCACAGTGCTTGATGTCAGTGGTAGCATGGCTGGAACTAAGCTTGCACTACTAAAAAGAGCTATGGGATTTGTCATACAGAACCTAGGTTCTAATGACCGGCTCTCTGTTATTGCTTTTTCTTCCACAGCTCGCCGCCTCTTTCCCTTGTGCAGAATGACTGATTCTGGGCGGCAGAAGGCATTACAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATCGCGGAAGGGCTGAGAAAATGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATACTGTTGTCCGATGGTCAAGATAATTACACTGTCAATGGCTCTGGAACCAGCCAACCCCAACCAAATTACCAGTTTCTTCTGCCCACTTCTATCAGTGGTGGTGATAATTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTCGGTGCCGATCATGATGCTTCACTAATGCACTCAATTTCAGAGACTTCTGGTGGCACATTTTCTTTCATTGAGACTGAAGCTGTATTACAGGATGCGTTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTTCAGGAGCTGCAAGTGGGAATTGAGTGCACACACCCAAATCTCAATCTTGTCTCACTCAAAGCAGGAAGTTACCCTAGCCATTTGATGGCCGATGGATGCAAAGGATTGATTGATGTTGGAGACCTGTATGCTGATGAAGAGAGGGATTTTCTAGTTTCAGTTAATGTCCCAGCTACATCCGGTAATGAAACATCATTGATAAAGGTCAAATGTGTGTACAAGGATCCCTTTACTCAGGAAACAACAACATTGGAAAGTGAGGAAGTTAAGATTGAGCGGACTGAAAATGTGGGGCAGGTTGTAATGTCACTTGAAGTGGACAGACAGCGCAGCAGGCTCCAAGCGGCTGAGGCAATGGCCCAGGCGTGCAGTGCAGCTGAACAGGGAGACCTAAGTGGAGCAGTACTTATCCTTGAGAACTGTAGAAAGATGCTTTCAGAGACTGTTTCGGCCAAATCTCATGACCGCCTTTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCAAGTAGGCATGTGTATGAAGCATCTGGGAGAGCATATATTCTTTCTGGATTGAGTTCACACTCATGGCAAAGAGCAACAGCAAGAGGTGATTCCACTGATAGGTCAAGTCTTGTTCAGGCATATCAAACACCATCGATGGCTGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCAGGGCAGAGGCTTCTCCAGCCACTGGTGTCATACAGACCACAACCATGCCCAAGGTGA 2196 0.4663 MGSKWKKAKVALGLNLCMFVPRTLDDDSPPHTVVSERLSDATLLSPANWSTSSSRPTTPVSSFHGLKLSKSSSKSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFQCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIQGRVSPSPVNWPQNDALMAVVHRVPLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQHAFSERSTCNKSTEDTDAAGAMEIKTFPEVSAAPGSKTYSNFTVLVHLKATAAATAAAAKRQNLSRNQTNLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQKALQAVNSLVANGGTNIAEGLRKCAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGTSQPQPNYQFLLPTSISGGDNSGFQIPVHAFGFGADHDASLMHSISETSGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECTHPNLNLVSLKAGSYPSHLMADGCKGLIDVGDLYADEERDFLVSVNVPATSGNETSLIKVKCVYKDPFTQETTTLESEEVKIERTENVGQVVMSLEVDRQRSRLQAAEAMAQACSAAEQGDLSGAVLILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQAYQTPSMAEMLTRSQAMLLGSPSGQRLLQPLVSYRPQPCPR* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1464 731 Gene3D von Willebrand factor, type A domain 284 471 IPR036465 -
Gso20g1464 731 SMART ring_2 80 123 IPR001841 -
Gso20g1464 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Gso20g1464 731 Coils Coil 629 649 - -
Gso20g1464 731 Pfam RING-like zinc finger 80 109 IPR001841 -
Gso20g1464 731 SUPERFAMILY RING/U-box 76 130 - -
Gso20g1464 731 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Gso20g1464 731 MobiDBLite consensus disorder prediction 47 71 - -
Gso20g1464 731 ProSiteProfiles VWFA domain profile. 284 470 IPR002035 -
Gso20g1464 731 SUPERFAMILY vWA-like 279 470 IPR036465 -
Gso20g1464 731 SMART VWA_4 282 469 IPR002035 -
Gso20g1464 731 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 709 - -
Gso20g1464 731 Pfam von Willebrand factor type A domain 284 467 IPR002035 -
Gso20g1464 731 CDD vWA_C3HC4_type 283 457 - -
Gso20g1464 731 PANTHER OS10G0464500 PROTEIN 3 709 - -
Gso20g1464 731 Pfam VWA / Hh protein intein-like 633 705 IPR032838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1464 Gso-Chr20 44928729 44933655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1464 55 131 C3H Transcription Factor Family AT2G04240 32.468 7.63e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1464 - - gmx:100818239 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1464 20 44928729 44933655 Gso20g1464 20 44928729 44933655 ECH