Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1459 ATGATGAAATTTTCAATTGTCGAGAAAATGGTTGGACCAAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCGAGGACGTTGACGGCGGCGCCGCCACCTTACCGTCGGTAGCCGCTGCCGGCAACTGCAACTCGCTGGCGAGCATCTGGCCCGCTGAGTCCGACTCGTTTCCTACCTCCGACTCGGTGTTTTCCGGCAACACCGCTTCGGACCTCTCGGCGGAGCTCTCGGTTCCGTATGAAGACATTGTCCAATTGGAATGGTTGTCCAATTTTGTGGAGGATTCCTTTTGTGGGGGGAGCCTAACAATGAACAAAGTGGAAGAGCCATCATGTACCACCAAGGAGGACTCAGTAAACACCCAATTTCACACATCAAGCCCAGTTTCTGTCCTTGAAAGTAGCAGTTCTTGCTCTGGTGGCAAGACTTTTCCACTAAGCAGTCCAGAGATTTACATCCCTGTGCCATGTGGACGTACACGCAGCAAGCGTCCACGTCCAGCAACCTTCAATCCTAGGCCTGCCATGAACCTCATTTCCCCTGCCTCTTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCATATCATCCAAGTCATCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACTTGTTCCCAAGATGCCAAAACAAGCTTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGCTGCCACTTCCATTAGTTCCAGCTGATAACAATCAAAATGCCTCACAACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTGTGCAATGCTTGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAGTACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCTGTGCACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGGGCATTGACAAATCCGGTTTTGCAATCAATTCAGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1074 0.5009 MMKFSIVEKMVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAATLPSVAAAGNCNSLASIWPAESDSFPTSDSVFSGNTASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMNKVEEPSCTTKEDSVNTQFHTSSPVSVLESSSSCSGGKTFPLSSPEIYIPVPCGRTRSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKSSSDSENFAESQLVPKMPKQASGEPKKKKKVKLPLPLVPADNNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGIDKSGFAINSAASPELIPNTNSSLTLEYM* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1459 357 SMART GATA_3 257 307 IPR000679 GO:0006355|GO:0043565
Gso20g1459 357 ProSitePatterns GATA-type zinc finger domain. 263 288 IPR000679 GO:0006355|GO:0043565
Gso20g1459 357 CDD ZnF_GATA 262 319 IPR000679 GO:0006355|GO:0043565
Gso20g1459 357 Gene3D - 258 307 IPR013088 GO:0006355|GO:0008270
Gso20g1459 357 PANTHER GATA TRANSCRIPTION FACTOR 8 10 357 - -
Gso20g1459 357 ProSiteProfiles GATA-type zinc finger domain profile. 257 293 IPR000679 GO:0006355|GO:0043565
Gso20g1459 357 PANTHER GATA TRANSCRIPTION FACTOR 10 357 - -
Gso20g1459 357 MobiDBLite consensus disorder prediction 204 220 - -
Gso20g1459 357 MobiDBLite consensus disorder prediction 204 241 - -
Gso20g1459 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 261 320 - -
Gso20g1459 357 Pfam GATA zinc finger 263 296 IPR000679 GO:0006355|GO:0043565
Gso20g1459 357 PIRSF Txn_fac_GATA_plant 7 350 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1459 Gso-Chr20 44879141 44882569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1459 28 325 C2C2-Gata Transcription Factor Family AT4G32890 37.500 2.18e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso20g1459 GATA 6.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1459 - - gmx:100816641 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1459 20 44879141 44882569 Gso20g1459 20 44879141 44882569 ECH
Gso20g1459 20 44879141 44882569 Gso10g1891 10 45800692 45804350 GST
Gso16g1249 16 31788301 31794542 Gso20g1459 20 44879141 44882569 PCT
Gso2g0613 2 6358636 6364602 Gso20g1459 20 44879141 44882569 PCT
Gso20g1459 20 44879141 44882569 Gso16g1249 16 31788301 31794542 PCT
Gso20g1459 20 44879141 44882569 Gso2g0613 2 6358636 6364602 PCT