Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1458 ATGTTTATGGTTATGGATTCAGCAGAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCCCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCTGAACACGCTCATGGGAAGAGGGTAGATTTCGCCAAAAACCAAACCCGTGTTCCACCACTCATCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACTGACGAGGTGTATGTCAAAATGAGGCTCACCCCTTTGAGGGAACATGAATTGTTGGATTCACAAGATGATTGTTTCTTGGGGAACAGTGCTGGTGGAGGAGGAGTTGATCAGGGTCAAGAGAAGCCTCCAACTTCTTTTGCCAAGACACTCACACAATCTGATGCAAACAATGGTGGAGGCTTTTCTGTGCCTCGTTACTGTGCTGAAACCATTTTCCCAAGGTTGGATTATTCTGCTGAGCCTCCTGTTCAGACCATCATTGCTAAGGATATGCATGGACAGTGCTGGAAGTTCAGGCATATCTATAGAGGGACACCAAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTCGTGAACCAGAAGAGGCTTGTTGCTGGCGACTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGCGGGCTAAGAAGGGGATTGGTGGAGGGACTGAGTTCTCTTCTGGTGGATGGAATAACCCTCTCTTTGGTGGTGGCTTCTTGTGTGGGAGTGAGAGCAATTTGATGAGTGGTGGTGATCATGAGATGTTGGTGGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCTGTGACTTGTGCTGTTAATGGAAGGCCCTTTGAGGTTGTGTACTATCCAAGGGCTAGTTCGCCAGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAAGTTGCAGATCCCATCCTTTGGCCTGATTCTCCATGGCGTCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTGAAGTGTGTAAACCCGTGGCTGGTTGAACTAGTCTCAAACATGCCTACATTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGTTTTCTACAGGACCCTTATTTTCAAGTCATCAACCAACTCCCAATGCCTTCATTCTCTAGCAACCTTCTCAATTACACCAACTCTATTTGTACCATTGAAGATAACAATAGTTCTGGAGGCATACAGGGAGCCAGGCATCCTCAATTTGGACTATCTCCTTCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTCTAGGTGGTTTCTCAAGGCTTGACCATGCAGCAGCACAACCTATTATGCCTCATTGTGGAACCTTTAAGAACAACACCACTACTAAGGCCAATGTTGACATTTCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTCAAGGAATCCAATGAAACAAAAGCACCTCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAGAAGAGCTCAAACACTACTAGCTCTGCTAGTACTAATGGTAATAGTGTATCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGAGGATCTCCCTGGTACAAGGAACAACACAAGTCTGATCTTGGAAATGACAATGTTAACACATTGTGTATTGCTTTATAA 1782 0.4551 MFMVMDSAERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKRVDFAKNQTRVPPLIPCRLSAMKYMADPDTDEVYVKMRLTPLREHELLDSQDDCFLGNSAGGGGVDQGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGGWNNPLFGGGFLCGSESNLMSGGDHEMLVGRVAAESVVEAVTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPILWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLQDPYFQVINQLPMPSFSSNLLNYTNSICTIEDNNSSGGIQGARHPQFGLSPSDFPFNKLPADMLLGGFSRLDHAAAQPIMPHCGTFKNNTTTKANVDISCLLTVGNPGQNFKESNETKAPHILLFGKLIHTEQKSSNTTSSASTNGNSVSEGNSLKTSNASDGGSPWYKEQHKSDLGNDNVNTLCIAL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1458 593 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Gso20g1458 593 MobiDBLite consensus disorder prediction 107 132 - -
Gso20g1458 593 PANTHER AUXIN RESPONSE FACTOR 16 6 582 - -
Gso20g1458 593 Gene3D - 316 389 - -
Gso20g1458 593 SUPERFAMILY DNA-binding pseudobarrel domain 119 225 IPR015300 -
Gso20g1458 593 SMART B3_2 124 226 IPR003340 GO:0003677
Gso20g1458 593 CDD B3_DNA 123 224 IPR003340 GO:0003677
Gso20g1458 593 MobiDBLite consensus disorder prediction 539 579 - -
Gso20g1458 593 Gene3D - 122 226 IPR015300 -
Gso20g1458 593 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso20g1458 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 582 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso20g1458 593 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Gso20g1458 593 MobiDBLite consensus disorder prediction 539 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1458 Gso-Chr20 44857244 44860393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1458 9 579 B3 DNA Binding Superfamily AT4G30080 55.593 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso20g1458 B3 2.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1458 - - gmx:100818234 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1458 20 44857244 44860393 Gso20g1458 20 44857244 44860393 ECH
Gso20g1458 20 44857244 44860393 Gso10g1892 10 45818961 45822473 GST