Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1455 ATGGCGAAGGACGTTGAGGTTGCTGAGCGTGGCTCCTTCTCTGGGAAGGACTACCAGGACCCTCCACCAGCACCACTCATTGATGCTGAGGAGCTCACAAAGTGGTCCTTTTACAGGGCTCTTATTGCTGAGTTCATTGCCACTTTGCTCTTCCTCTACATTACTGTGCTCACAGTTATAGGGTACAAGCACCAGACGGATCATGCTGATGCGTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGTGTCTTTGATCCGAGCCATCATGTACATGGTGGCTCAGTGCTTGGGTGCTATCTGTGGAGTTGGTTTAGTTAAGGCTTTCCAAAAGTCTTACTTCAACAAGTATGGTGGTGGGGCTAATTCCCTCGCTGATGGGTACAGCACAGGTACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTGTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACTGGCACTGGTATCAACCCTGCTAGGAGTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATTGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTACCACCAGTTCATCTTGAGAGCAGGTGCAGCCAAGGCCCTTGGATCATTCAGGAGTAACCCCCATAATTGA 855 0.5006 MAKDVEVAERGSFSGKDYQDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQTDHADACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYFNKYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPHN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1455 284 MobiDBLite consensus disorder prediction 1 24 - -
Gso20g1455 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Gso20g1455 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Gso20g1455 284 TIGRFAM MIP: MIP family channel proteins 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 281 IPR034294 -
Gso20g1455 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Gso20g1455 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1455 284 PANTHER AQUAPORIN PIP2-4-RELATED 1 281 - -
Gso20g1455 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1455 Gso-Chr20 44815038 44817939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1455 1 280 Major Intrinsic Protein MIP AT2G37170 84.806 2.82e-178 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1455 K09872 - gmx:100815583 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1455 20 44815038 44817939 Gso20g1455 20 44815038 44817939 ECH
Gso20g1455 20 44815038 44817939 Gso10g1896 10 45878593 45881673 GST