Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1446 ATGATGGGTTATCCTTCAAGACTCTATCTTGTTTTGCTTTTGTCCATTTGTGGTGTGGTTTCATTAGCTTCCCCAATTGAAGATCAGAAGAAAGATAGAATTACTCAGCTGCCAGGGCAGCCAAAGAATGTGGGATTTGCTCAGTATTCAGGCTATGTCACTGTGAATGAGCAAAGTGGAAGATCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGGCGTGGACCAAGGTCAAGGTCACTAGTGTTGTGGCTCAATGGTGGCCCTGGATGTTCCTCTATTGCTTATGGTGCATCTGAGGAGATTGGTCCTTTTCACATTAGGCCTGATGGCAAGTCACTTTACTTGAACCCTTATGCTTGGAACAATTTGGCAAATGTACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTCTCATATTCCAATAAGACAACAGATCTGTATACATTTGGTGACCAGAAAACAGCTGAAGATGCATATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAATATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATGGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACGTATAGGATGCTAAAAATTGCCTGCAATTTTGGGTCCTCTCAGCATCCATCAGTGCAATGCATGCAGGCTCTCAGAGTTGCAACTGTGGAGCAGGGAAACATCGATCCATATAGCGTTTATACACAGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTATCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTTACTGGGATTCCTTATGCATGGAAAGCATGCAGTGATATTGTTGGGAACTATTGGACTGATTCTCCATTGTCTATGCTTCCTATATATCAAGAACTTATTAGTGCTGGTCTCCGAATATGGGTCTACAGTGGAGACACTGATGCAGTGGTTCCAGTGACTGCTACTCGATATTCAATTGATGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGTATGATAATGGCAAGGTTGGTGGGTGGAGTCAAGTTTATAAAGGGTTAACATTGGTTACAGTAAGAGGAGCTGGACATGAGGTTCCTCTTCATAGGCCCCGCCAGGCATTCATTCTTTTTAGGTCATTCTTGGAGAACAAGTCCATGCCATCCACAAGTTAG 1383 0.423 MMGYPSRLYLVLLLSICGVVSLASPIEDQKKDRITQLPGQPKNVGFAQYSGYVTVNEQSGRSLFYWLVEAPVRRGPRSRSLVLWLNGGPGCSSIAYGASEEIGPFHIRPDGKSLYLNPYAWNNLANVLFLDSPAGVGFSYSNKTTDLYTFGDQKTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQIVYEKNKGIKNPVINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLKIACNFGSSQHPSVQCMQALRVATVEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKALHANVTGIPYAWKACSDIVGNYWTDSPLSMLPIYQELISAGLRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDNGKVGGWSQVYKGLTLVTVRGAGHEVPLHRPRQAFILFRSFLENKSMPSTS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1446 460 Pfam Serine carboxypeptidase 38 453 IPR001563 GO:0004185|GO:0006508
Gso20g1446 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Gso20g1446 460 Gene3D - 359 452 - -
Gso20g1446 460 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Gso20g1446 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 20 458 IPR001563 GO:0004185|GO:0006508
Gso20g1446 460 PANTHER CARBOXYPEPTIDASE 20 458 - -
Gso20g1446 460 SUPERFAMILY alpha/beta-Hydrolases 29 456 IPR029058 -
Gso20g1446 460 Gene3D - 312 348 - -
Gso20g1446 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Gso20g1446 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Gso20g1446 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Gso20g1446 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Gso20g1446 460 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1446 Gso-Chr20 44678079 44682644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1446 322 456 Calmodulin-binding Proteins AT2G22960 29.412 7.59e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1446 K16297 - gmx:100812000 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1446 20 44678079 44682644 Gso20g1446 20 44678079 44682644 ECH
Gso20g1446 20 44678079 44682644 Gso10g1908 10 46030692 46036270 GST