Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1439 ATGGGGAGGAAAGGGGGTTGGTTTTCTGCAGTGAAGAGAGTTTTTGTTTCTGATTCCAAAAAGGAACAGAAACACCATCATCATCATCATCATCATAAGTCAAAGTTAGGATGTTTTGGGACTCATCACTATGAGGATCTAGAAGGAGCACCAATTGCCGTTGTTCCTTCACTTCCACCAAGAAAAGATCCCAAACCAATAAGTGAGGCAGAGAATAATGAACAGAGCAGGCAAGCCTTTTCTTTGGTTTTGGCTACTGCTGTGGCCGCCGGGGCTGCTGTTGCTGCAGAGGTTGCTTGTCTCACAAACACGCCTCGTTCCAATGGAAAAGCGAATCAAGAAATGGCAGCTATCAAGATTCAAACAGCTTACCGTGGATATTTGGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGGTTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGGCTCTTCATAGGCAACTGCAGCAGAAACGTGAAAAGGAATTTGACAAGTCGCAAGCTAATATTGGAGAGAAGTGGGATGATAGCTTGAAATCAAAGGAGCAAGTTGAAGCCAAATTGTTGAACAGACAAGTAGCAGCTATGAGAAGAGAAAAGGCTTTGGTCTATGCATCAACACATCAGCAAACGTGGAGGAACTCTTCAAAATCTGCTACAAATGCAGCATTTATGGATCCAAACAATCCCCACTGGGGCTGGAATTGGCTAGAGCGATGGATGGCTGCAAGGCCATGGGAGGGTCAAAACACTACATACCACATTGGCCATGCATCTGCCAAAAGTGTTGCAAGCCAAACCATGTCAGTTGGTGAAATCACAAAATTGTATTCTCTCCGTGATCAGAATAATGATATCAAAATTTCCCCAGCAAGCCAAAAACCAACCTGCCCTCCCAGCCACAATTCTCCTTCAACAACAGCCTCAAAGGTCCCATTAGCCAATGGAGCAAAGGCAAAGGTACTATCAAGTCCAAGGGGTGGTTCATGGGGTAGTGATGGTGACTCAAAAAACATGTTCAGCAAAACCTCAGAAAACAGCCGCAGGCACAGCATTGGAGTGTCTCAAGTGAGAGATGATGAGAGCAATTCAAGCTCATCACCGTCCACAAAGGTTGCAACAAAGGCAAAGTCATCATCATCCAAAGTGAGAAGTGCATTGGTTGGCGAACATAGTAATGGAACACCTGAAAAAGCAGCTTCTGCTCTCATAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCCGGTACAAGAAGGTATGCTGTTTCAACTAGACCGGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGCTACCATCCCTGAGGAGAAAGTGAGAATGAGAAATGGAGGGAGCAGGTAG 1467 0.456 MGRKGGWFSAVKRVFVSDSKKEQKHHHHHHHHKSKLGCFGTHHYEDLEGAPIAVVPSLPPRKDPKPISEAENNEQSRQAFSLVLATAVAAGAAVAAEVACLTNTPRSNGKANQEMAAIKIQTAYRGYLARRSLRGLRGLSRLKTLVQGQSVQRQAATTLQCMQTLSRLQSQVRARKVRMSEENQALHRQLQQKREKEFDKSQANIGEKWDDSLKSKEQVEAKLLNRQVAAMRREKALVYASTHQQTWRNSSKSATNAAFMDPNNPHWGWNWLERWMAARPWEGQNTTYHIGHASAKSVASQTMSVGEITKLYSLRDQNNDIKISPASQKPTCPPSHNSPSTTASKVPLANGAKAKVLSSPRGGSWGSDGDSKNMFSKTSENSRRHSIGVSQVRDDESNSSSSPSTKVATKAKSSSSKVRSALVGEHSNGTPEKAASALIKKRLSFPASPAGTRRYAVSTRPGNVASNKSVANATIPEEKVRMRNGGSR* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1439 488 MobiDBLite consensus disorder prediction 22 37 - -
Gso20g1439 488 Coils Coil 214 234 - -
Gso20g1439 488 Pfam IQ calmodulin-binding motif 115 134 IPR000048 GO:0005515
Gso20g1439 488 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 480 - -
Gso20g1439 488 MobiDBLite consensus disorder prediction 364 423 - -
Gso20g1439 488 MobiDBLite consensus disorder prediction 321 347 - -
Gso20g1439 488 Gene3D iswi atpase 110 137 - -
Gso20g1439 488 MobiDBLite consensus disorder prediction 182 203 - -
Gso20g1439 488 SMART iq_5 112 134 IPR000048 GO:0005515
Gso20g1439 488 MobiDBLite consensus disorder prediction 447 469 - -
Gso20g1439 488 MobiDBLite consensus disorder prediction 321 435 - -
Gso20g1439 488 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Gso20g1439 488 PANTHER IQ-DOMAIN 5-RELATED 1 480 - -
Gso20g1439 488 Coils Coil 176 196 - -
Gso20g1439 488 MobiDBLite consensus disorder prediction 53 74 - -
Gso20g1439 488 MobiDBLite consensus disorder prediction 18 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1439 Gso-Chr20 44616130 44620018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1439 1 450 IQD Protein Family AT5G03040 41.102 1.68e-90 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1439 - - gmx:100807725 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1439 20 44616130 44620018 Gso20g1439 20 44616130 44620018 ECH
Gso20g1439 20 44616130 44620018 Gso10g1914 10 46084931 46088515 GST