Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1436 ATGGAGTACAAAGTGAAAACCACAACCTCAACACCTTCTCCACCAATCCCAATCCATCTTCCCACTATGCTCTCAAACTCTCCCCCATCTTCATCTTCTTCACCTCCTTCACAATCTCCCACTCCTTTCCCTTCACCCTCTCAGGGCTCTCCCTCTGCTGCTCCACCGTCTCCTCCGCCGCCGCCGCCACCCGTGGTGGTTAGCCCTTGTGCTGCCTGCAAGATCCTCCGCCGCAGGTGTGTGGAGAAGTGTGTGTTGGCTCCATATTTTCCTCCCACTGATCCACTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTGCCAGAATCCCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTATGGGTGTGCAGGTGCAATATGCCAACTTCAAAAGCAAGTTAGTGAGCTACAAGCACAGCTGGCCAAAGCACAAGCTGAGGTAGTGAACATGCAGTGCCAACAAGCCAATTTAGTGGCCCTAATTTGCATGGAAATGAGTCAGTCACAGGAGCAGCACGTGCTTCAGCCTCAACCTCACGTTGATATGAGCTGCTTCATAGAGGACAACAGTTTTGGTACTGCTTGGGAGCCTCTTTGGACATAA 669 0.5097 MEYKVKTTTSTPSPPIPIHLPTMLSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPPPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSFGTAWEPLWT* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1436 222 ProSiteProfiles LOB domain profile. 68 169 IPR004883 -
Gso20g1436 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 53 212 - -
Gso20g1436 222 MobiDBLite consensus disorder prediction 33 63 - -
Gso20g1436 222 MobiDBLite consensus disorder prediction 1 63 - -
Gso20g1436 222 Coils Coil 148 175 - -
Gso20g1436 222 Pfam Lateral organ boundaries (LOB) domain 69 166 IPR004883 -
Gso20g1436 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 53 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1436 Gso-Chr20 44575551 44577283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1436 65 222 AS2 family AT1G07900 72.393 3.14e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso20g1436 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1436 - - gmx:100806667 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1436 20 44575551 44577283 Gso20g1436 20 44575551 44577283 ECH
Gso20g1436 20 44575551 44577283 Gso10g1917 10 46118887 46120649 GST