Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1431 ATGTCTGGCAATTCGAATTGCAGTGTTTACATAGGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCTGTCCGGCTTTTTTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGTCTGCCAATAAACAGATATCTGGGAGAGACAAAACTACCTCTAATGGTTCTACAGCAATTGCCCCCACATTAAATTCTTCTCAAAGACCAAGGCCATATCCTGTGCCTATAAACAATTCAGAAAATTTTCAGCACCCTGCTAGGCTATCAACTCCTGATCGATTTTCAGATTATCCAGTAAATAATTCTCAAGGTATACCTATGCACGTCGCTCTCCAGATGGGTTGCTGCTTACAAACTTAA 489 0.407 MSGNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLITLYNRTLKFASANKQISGRDKTTSNGSTAIAPTLNSSQRPRPYPVPINNSENFQHPARLSTPDRFSDYPVNNSQGIPMHVALQMGCCLQT* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1431 162 PANTHER OS01G0876500 PROTEIN 1 149 - -
Gso20g1431 162 SMART rrm1_1 8 82 IPR000504 GO:0003723
Gso20g1431 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Gso20g1431 162 Gene3D - 2 95 IPR012677 -
Gso20g1431 162 SUPERFAMILY RNA-binding domain, RBD 4 86 IPR035979 GO:0003676
Gso20g1431 162 MobiDBLite consensus disorder prediction 87 115 - -
Gso20g1431 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Gso20g1431 162 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1431 Gso-Chr20 44496810 44500093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1431 7 97 Eukaryotic Initiation Factors Gene Family AT1G49760 27.473 5.79e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1431 K12831 - gmx:100803118 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1431 20 44496810 44500093 Gso10g1926 10 46230215 46233194 GST