Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1429 ATGGGGGAATCCAATGTCATGACCAAGACTGAGGATGGTGCTTGTCTGTCTGCAATGCTGCTTAGTACTAATCTAGTGTACCCTGCAGTACTGAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATTGCTAAGGCAACACCAGCTGGTTCTTTTATGTCATCCCATGAAATTGCTTCTAAGCTCCCAACACAACACCCTGACCTGCCTAATAGGCTTGACCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACTACTTCCACTCGCACCACACACCATGGTGCCACTGAAACAGTTTATGGACTCTCACAAGTTGGACAATACTTTGTCCCTGACGGAACTAGGGGCTACTTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGGTCAGTGATTTTAACTCCTATATACGTATATCACATAGAGGACAGGTGTATGCTGAACTTCAAGGAAGCCGTGGTTGATGCAGACATTGACTTGTTCAAGAAAATTCTTGGAGTAACAATGTACCAGTACATGGAAAACGATCCAAAAATGAACCAAATCTTTAACAAGTCAATGGCCAACTTGTGTGCAACAGAGATGAGTAGAATACTTGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGACGTAGGAGGTGGCAATGGACAAAATCTAAAAATGATAATCTCCAAATACCCTTTAATTAAAGGAATTAATTTTGATCTTCCCCAAGTGATTGAAAATGCACTTCCCCTTCCAGGGATTGAGCATGTTGGAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACACCATAATACTAAAGGCTGTATGCCACAATTGGTCAGATGAAAAATGCATAGAATTTCTAAGGAATTGTCACAAAGCATTGTCTCCAAATGGGAAGGTGATTGTGGTGGAGTTCATATTGCCAGAAGAACCCGAACCAACTGAAGAATCCCAGCTTGTTTCCACTCTTGACAACCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGACTTTGTGCAAGCTCTCTGGATTTTCAAATTTTCAAGTTGCTTGTCGTGCCTTCTCTAGTCTGGGAGTGATGGAATTTTACAAATAG 1134 0.4153 MGESNVMTKTEDGACLSAMLLSTNLVYPAVLNAAIELNLFEIIAKATPAGSFMSSHEIASKLPTQHPDLPNRLDRMLRLLASYSVLTTSTRTTHHGATETVYGLSQVGQYFVPDGTRGYLASFTAFVCYPPLLQVWSVILTPIYVYHIEDRCMLNFKEAVVDADIDLFKKILGVTMYQYMENDPKMNQIFNKSMANLCATEMSRILEIYTGFEGISTLVDVGGGNGQNLKMIISKYPLIKGINFDLPQVIENALPLPGIEHVGGDMFAKVPQGDTIILKAVCHNWSDEKCIEFLRNCHKALSPNGKVIVVEFILPEEPEPTEESQLVSTLDNLMFITVGGRERTQKQYETLCKLSGFSNFQVACRAFSSLGVMEFYK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1429 377 SUPERFAMILY "Winged helix" DNA-binding domain 12 115 IPR036390 -
Gso20g1429 377 PIRSF O-mtase 2 377 IPR016461 GO:0008168
Gso20g1429 377 Pfam O-methyltransferase domain 157 358 IPR001077 GO:0008171
Gso20g1429 377 Gene3D - 26 205 IPR036388 -
Gso20g1429 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 377 IPR016461 GO:0008168
Gso20g1429 377 Pfam Dimerisation domain 30 81 IPR012967 GO:0046983
Gso20g1429 377 Gene3D Vaccinia Virus protein VP39 187 366 IPR029063 -
Gso20g1429 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 143 374 IPR029063 -
Gso20g1429 377 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 4 377 - -
Gso20g1429 377 PANTHER O-METHYLTRANSFERASE 4 377 IPR016461 GO:0008168
Gso20g1429 377 CDD AdoMet_MTases 217 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1429 Gso-Chr20 44487305 44488988 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1429 10 367 Monolignol Biosynthesis Gene Families AT5G54160 46.797 1.21e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1429 - - gmx:100802593 696.041