Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1427 ATGGAAGATTCAGAAGAGGATGAACTTTTGAATCTTAGCCTTTCAGTTGCTGCTGATAGGGAAAGGAAAAAGAAGGGAAAGACAATTAGGGAACATAATGTTTCCATGAGTAGTACCACTACTACTACTAGGAACTCCTATGAAAGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATCATAGGAGGAAAGGTGTTGTGGAAGATGGAAATGGCCTCCCTCTGATCCATTTGTTGCTCTCAACCGCAACTGCAGTTGATGACAACAACATGGACTCGTCCTTAGAGAATCTGGCTGATTTATACCAAACAGTTTCCATAACTGGTGACTCAGTTCAACGTGTTGTGGCCTATTTTGTTGATGGTTTATCTGCAAGGCTTCTCACAAGAAAATCCCCATTCTATGATATGCTCATGGAGGAACCAACAACTGAAGAAGAGTTCCTTTCATTCACGGATCTCTACAGGGTTTCACCTTACTTCCAATTTGCTCACTTCACAGCAAACCAAGCTATTTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGTGCCTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTTTCAGAGAAGGCAACAAGTGGAAACCGCATATCCCTCAGGATAACCGGTTTTGGGAAGAATCTCAAGGAGCTTCAAGAAACTGAGTCTAGGTTGGTTAATTTCTCAAAGGGTTTTGGAAGCCTTGTGTTTGAATTCCAAGGGCTGCTTAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAACGAAACCGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCTTCCATTGTTGTGGTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTCTTGTCGAGGTTCACGGACTCCTTGCACTACTTTGCAGCGATGTTTGATTCACTTGATGATTGTCTTCCACTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGGTGTGGATTGCCCAAAGTATGAGAGGATGGAGACATGGAAAGCTAGAATGGAGAATCATGGGTTTGTTGCCACAAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGCCCTCTTCAGTTTGAGGAAGAGGGGGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATTTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAATCAGTCTGA 1389 0.437 MEDSEEDELLNLSLSVAADRERKKKGKTIREHNVSMSSTTTTTRNSYERKIFRLLQMREQMLRQDHHRRKGVVEDGNGLPLIHLLLSTATAVDDNNMDSSLENLADLYQTVSITGDSVQRVVAYFVDGLSARLLTRKSPFYDMLMEEPTTEEEFLSFTDLYRVSPYFQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLVNFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1427 462 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 460 IPR005202 -
Gso20g1427 462 ProSiteProfiles GRAS family profile. 72 460 IPR005202 -
Gso20g1427 462 MobiDBLite consensus disorder prediction 21 42 - -
Gso20g1427 462 Coils Coil 351 371 - -
Gso20g1427 462 Pfam GRAS domain family 81 460 IPR005202 -
Gso20g1427 462 PANTHER OSJNBA0084A10.13 PROTEIN 8 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1427 Gso-Chr20 44467382 44469068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1427 89 459 GRAS Transcription Factor Family AT3G54220 35.000 1.49e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso20g1427 GRAS 1.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1427 - - gmx:100813979 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1427 20 44467382 44469068 Gso10g1928 10 46251270 46252928 GST
Gso16g1261 16 31904484 31906400 Gso20g1427 20 44467382 44469068 PCT
Gso2g0620 2 6429500 6431377 Gso20g1427 20 44467382 44469068 PCT
Gso20g1427 20 44467382 44469068 Gso16g1261 16 31904484 31906400 PCT
Gso20g1427 20 44467382 44469068 Gso2g0620 2 6429500 6431377 PCT