Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1426 ATGGATCCAAAAGGAAGCTTATGTGCTACAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGACTACAAACAAATTTGTCGTCAGATCCTCCCTCTTTCTATGGGGTCAGGATTGAATCACCTTTCGAAGAATTCATCCAACCCTCTCCTCCAACCCAATCTGTACTTCCAGGTGAATCTAACACAGATATTGATATCCCTGACCAGGAAAATTGTCCACTGAGTGACTCCTCACATACCAGTAAACTCCAAGATTGGAATCCAAGTGCGATGTTGAATAACCTTTCCTTCCTTGAAGTAAAGATTCATCAGCTTCGGGATCTAGTGCATGTAATTGTTAGTAAAAAGTGCCAACCTTTTGGACAACCTCATGAACTAGTGACTCAGGAACAACAGCTCATCACAGCCGATCTTACATCGATTATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAACGCAAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGAATCAGAACCAAGTAGTGGTATTAGGCCACAAAATAACAGTGGAAATAAACTGTTTGATCAGTCCATTCAGAATGATCTACCAAATAAATTGGAAATGGAGCAAAACTACAATATGGAAGAGCATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAATCTTCCACCCGGTTCCTACGAGATTTTGCAATTAGAAAAAGAAGAAATCCTCGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGCGGCCATGGTGACAAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAATCCGGGTCTGAACCAAAGCTCATCAAGAGGTATTCCTGCCCCTATAACGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGCGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGCCATACACCAGCTATTCCTTTGGATGAAACCAAAGGAATGGCTGAGCCACCTGATATCCAGAACAGAGAAAGCAACAATAAGGTAGAAAGTATTAACTTCTGTTTTGGATCAAATTCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATAATGATGATCCCATGAATTATTTCTCATCATTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAATGAATTCTCCCAACCTCCATTTGAAGATTCAGATGGTTGTTTCTCTTTTCCCATGTCAGGATCCTTTAATTATGCTCCCAAATTTGGTGGCGGTGAATCAAGTTCTGACAATCTGTAG 1530 0.4176 MDPKGSLCATRSSSLTSPGNGLQTNLSSDPPSFYGVRIESPFEEFIQPSPPTQSVLPGESNTDIDIPDQENCPLSDSSHTSKLQDWNPSAMLNNLSFLEVKIHQLRDLVHVIVSKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNANPLVGQLDQLHGINLPFESEPSSGIRPQNNSGNKLFDQSIQNDLPNKLEMEQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDKYKTPAALAKPHKESGSEPKLIKRYSCPYNGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGMAEPPDIQNRESNNKVESINFCFGSNSSSENVVQNMMDMKGNNDDPMNYFSSLNFEGCNFGAFNEFSQPPFEDSDGCFSFPMSGSFNYAPKFGGGESSSDNL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1426 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 30 491 IPR044300 GO:0010044|GO:0010447
Gso20g1426 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 284 IPR013087 -
Gso20g1426 509 ProSitePatterns Zinc finger C2H2 type domain signature. 259 279 IPR013087 -
Gso20g1426 509 SMART c2h2final6 344 366 IPR013087 -
Gso20g1426 509 SMART c2h2final6 257 279 IPR013087 -
Gso20g1426 509 SMART c2h2final6 306 339 IPR013087 -
Gso20g1426 509 MobiDBLite consensus disorder prediction 184 201 - -
Gso20g1426 509 MobiDBLite consensus disorder prediction 181 201 - -
Gso20g1426 509 MobiDBLite consensus disorder prediction 7 31 - -
Gso20g1426 509 MobiDBLite consensus disorder prediction 1 31 - -
Gso20g1426 509 SUPERFAMILY beta-beta-alpha zinc fingers 256 279 IPR036236 -
Gso20g1426 509 MobiDBLite consensus disorder prediction 45 80 - -
Gso20g1426 509 Gene3D Classic Zinc Finger 241 312 - -
Gso20g1426 509 MobiDBLite consensus disorder prediction 46 80 - -
Gso20g1426 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 30 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1426 Gso-Chr20 44445690 44448535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1426 225 507 C2H2 Transcription Factor Family AT1G34370 68.858 2.58e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1426 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1426 - - gmx:100801536 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1426 20 44445690 44448535 Gso10g1930 10 46269285 46272049 GST