Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1422 ATGGGGGAATCCAATGTCATGACCAAGACTGAGGATGGTGCTTGTCTGTCTGCAATGCTGCTTAGTACTAATCTAGTGTACCCTGCAGTACTGAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATTGCTAAGGCAACACCAGCTGGTTCTTTTATGTCATCCCATGAAATTGCTTCTAAGCTCCCAACACAACACCCTGACCTGCCTAATAGGCTTGACCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACTACTTCCACTCGCACCACACACCATGGTGCCACTGAAACAGTTTATGGACTCTCACAAGTTGGACAATACTTTGTCCCTGACGGAACTAGGGGCTACTTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGGCTGAACTTCAAGGAAGCCATGGTTGATGCAGACATTGACTTGTTCAAGAAAATTCATGGGGTAACAATGTACCAGTACATGGAAAAGGATCCAAAAATGAACCAAATCTTTAACAAGTCAATGGCCAACTTGTGTGCAACAGAGATGAGTAGAATACTTGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGACGTAGGAGGTGGCAATGGACAAAATCTAAAAATGATAATCTCCAAATACCCTTTAATTAAAGGAATTAACTTTGATCTTCCCCAAGTGATTGAAAATGCACCACCCCTTCCAGGGATTGAGCATGTTGGAGGCGATATGTTTGCAAGAGTTCCACAGGGTGACGCCATAATACTGAAGGCTGTATGCCACAATTGGTCAGACGAAAAATGCATAGAATTTCTGAGGAATTGTCACAAAGCATTGTCTCCAAATGGGAAGGTGATTGTGGTGGAGTTCATATTGCCAGAAGAACCCGAACCAACTGAAGAATCCCAGCTTGTTTCCACTCTTGACAACCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGACTTTGTGTAAGCTCTCTGGATTTTCAAATTTTCAAGTTGCTTGTCGTGCCTTCTCTAGTCTGGGAGTGATGGAATTTTACAAATAG 1083 0.4229 MGESNVMTKTEDGACLSAMLLSTNLVYPAVLNAAIELNLFEIIAKATPAGSFMSSHEIASKLPTQHPDLPNRLDRMLRLLASYSVLTTSTRTTHHGATETVYGLSQVGQYFVPDGTRGYLASFTAFVCYPPLLQVWLNFKEAMVDADIDLFKKIHGVTMYQYMEKDPKMNQIFNKSMANLCATEMSRILEIYTGFEGISTLVDVGGGNGQNLKMIISKYPLIKGINFDLPQVIENAPPLPGIEHVGGDMFARVPQGDAIILKAVCHNWSDEKCIEFLRNCHKALSPNGKVIVVEFILPEEPEPTEESQLVSTLDNLMFITVGGRERTQKQYETLCKLSGFSNFQVACRAFSSLGVMEFYK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1422 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 357 IPR029063 -
Gso20g1422 360 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 4 360 - -
Gso20g1422 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 360 IPR016461 GO:0008168
Gso20g1422 360 Pfam Dimerisation domain 30 81 IPR012967 GO:0046983
Gso20g1422 360 Gene3D - 2 111 IPR036388 -
Gso20g1422 360 Gene3D Vaccinia Virus protein VP39 114 360 IPR029063 -
Gso20g1422 360 PIRSF O-mtase 2 360 IPR016461 GO:0008168
Gso20g1422 360 Pfam O-methyltransferase domain 136 341 IPR001077 GO:0008171
Gso20g1422 360 CDD AdoMet_MTases 200 297 - -
Gso20g1422 360 SUPERFAMILY "Winged helix" DNA-binding domain 12 115 IPR036390 -
Gso20g1422 360 PANTHER O-METHYLTRANSFERASE 4 360 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1422 Gso-Chr20 44405349 44412660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1422 10 350 Monolignol Biosynthesis Gene Families AT5G54160 49.123 2.07e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1422 - - gmx:100798347 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1422 20 44405349 44412660 Gso10g1934 10 46300926 46302986 GST