Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1411 ATGTCAACACCAACATCAACGGCAGCGTTTGCTGGTGTAGAAACTCCTAATGGAGACTCTTCTAACACCAATCCTCATCCCAAACACACCCCTCAAGAATCGCGTGACCTCTCTCCTTTTTTGTCTTGTTCTTACCCCATCACTCTTAAGTTCATGGACGTGGCATACCGATTGAAGATAGAGGACAAACAAAAAAGCGGAGGGAGCATCAAGAGATTTTTTACGCCGCACGAATCATCACCGTCAGATCAAGGATCAAGGGCGGGAGCACCGAAGGAGCGAACTATATTAAAAGGAGTAACGGGGATAGCACAGCCAGGGGAGATCTTAGCGGTGCTGGGCCCATCAGGGAGCGGAAAATCGACGCTCCTTCACGCGCTCGCAGGGAGGCTCCATGGACCCGGCCTCACCGGAACAATCCTCGCAAACTCCAGCAAACTCACCAAACCGGTTCTCCGGCGAACCGGTTTCGTCACACAGGACGATATTCTCTACCCTCACTTGACGGTTCGCGAGACGCTCGTGTTCTGCGCGATGCTGAGGCTCCCGCGCGCGCTCCTGCGCTCGGAGAAGGTAGCGGCGGCGGAGGCGGCGATCGCGGAGCTAGGGCTGGGGAAGTGCGAGAACACCATAATCGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGAGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGAACCCTTCCCTCCTCATACTGGACGAGCCTACCTCCGGCTTGGACTCCACGGCGGCGCACCGCCTCGTGCTGACGCTCGGTTCGCTGGCGAAGAAGGGAAAAACGGTAATTACATCGGTGCACCAGCCCTCGAGCCGCGTCTACCAGATGTTCGACAAAGTTGTGGTTCTAACGGAGGGACAGTGTTTGTACTTTGGCAAAGGAAGCGACGCCATGCGCTACTTTCAGTCGGTCGGGTTCGCGCCGTCTTTTCCGATGAATCCGGCTGATTTTCTGCTCGATCTCGCTAACGGTGTTTGCCATGTCGATGGTCAAAGTGAAAAAGATAAACCAAACATAAAGCAAAGCCTAATCCATTCATACAACACAGTACTGGGTCCCAAGGTAAAAGCTGCCTGCATGGACACTGCTAATGTTCCTACAAAAAACACACACCCTTGGAGAAGCAACTCCTCAAAGGAATTTAGACGTAGCAACAGGGTTGGCTTCTTAGATTGGTTTTACCAATTCAGCATTCTGCTCCAGAGAAGCCTCAAAGAAAGAAAACACGAATCCTTCAACACTCTGAGAGTCTGTCAAGTTATTGCTGCAGCACTATTAGCTGGCTTAATGTGGTGGCACTCAGACTACAGGAACATCCAAGATAGGCTCGGCCTACTCTTCTTCATTTCCATCTTCTGGGGAGTCTTCCCGTCTTTCAACTCGGTTTTCGCATTCCCTCAAGAACGCACCATCTTCATGAAAGAGCGAGCTTCGGGTATGTACACACTGTCCTCCTATTTCATGGCTCGAATTGTTGGAGACCTGCCCATGGAGCTTATTCTTCCCACAATTTTCCTCATTGTGACATATTGGATGGGTGGATTAAAGCCTGATTTGTGGGCTTTTCTCTTGACTTTGTTGGTTGTGCTTGGATATGTGATGGTGTCACAGGGTCTTGGCCTTGCTTTAGGTGCAGCAATAATGGATGCCAAACAGGCTTCCACAGTGGCAGCAGTGACAATGCTAGCATTTGTGTTGACAGGTGGATACTATGTCCATAAGGTGCCATCTTGCATGGCTTGGATCAAATATATATCCACAACCTTCTACTGTTATAGGCTGCTGACTAGAATCCAGTATGAGGATGGCAAGAAGATATCATATCTATTGGGTTGCTATCATGGTGATAAGGGTGGCTGCAGGTTTGTTGAAGAGGATGTGGTGGGGCAAATTGGCACCCTAGGATGCATTGGGGTTTTGCTTTTCATGTTTGTGTTCTACAGATTATTGGCCTACCTTGCCTTGAGACGCATCAAGAGTTGA 2013 0.5062 MSTPTSTAAFAGVETPNGDSSNTNPHPKHTPQESRDLSPFLSCSYPITLKFMDVAYRLKIEDKQKSGGSIKRFFTPHESSPSDQGSRAGAPKERTILKGVTGIAQPGEILAVLGPSGSGKSTLLHALAGRLHGPGLTGTILANSSKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRALLRSEKVAAAEAAIAELGLGKCENTIIGNSFIRGVSGGERKRVSIAHEMLVNPSLLILDEPTSGLDSTAAHRLVLTLGSLAKKGKTVITSVHQPSSRVYQMFDKVVVLTEGQCLYFGKGSDAMRYFQSVGFAPSFPMNPADFLLDLANGVCHVDGQSEKDKPNIKQSLIHSYNTVLGPKVKAACMDTANVPTKNTHPWRSNSSKEFRRSNRVGFLDWFYQFSILLQRSLKERKHESFNTLRVCQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERTIFMKERASGMYTLSSYFMARIVGDLPMELILPTIFLIVTYWMGGLKPDLWAFLLTLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKYISTTFYCYRLLTRIQYEDGKKISYLLGCYHGDKGGCRFVEEDVVGQIGTLGCIGVLLFMFVFYRLLAYLALRRIKS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1411 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 313 IPR027417 -
Gso20g1411 670 Pfam ABC-2 type transporter 277 373 IPR043926 GO:0140359
Gso20g1411 670 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 19 668 - -
Gso20g1411 670 Gene3D - 87 314 IPR027417 -
Gso20g1411 670 MobiDBLite consensus disorder prediction 1 37 - -
Gso20g1411 670 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 19 668 - -
Gso20g1411 670 MobiDBLite consensus disorder prediction 1 28 - -
Gso20g1411 670 Pfam ABC-2 type transporter 404 609 IPR013525 GO:0016020|GO:0140359
Gso20g1411 670 MobiDBLite consensus disorder prediction 69 91 - -
Gso20g1411 670 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 320 IPR003439 GO:0005524
Gso20g1411 670 Pfam ABC transporter 97 248 IPR003439 GO:0005524
Gso20g1411 670 CDD ABCG_EPDR 91 302 - -
Gso20g1411 670 SMART AAA_5 106 297 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1411 Gso-Chr20 44281872 44289667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1411 107 334 Calmodulin-binding Proteins AT2G36910 29.237 3.21e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1411 K05681 - gmx:100812367 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1411 20 44281872 44289667 Gso10g1947 10 46439615 46446899 GST