Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1409 ATGTTTTTCAACCAAAAAATTGTGCTTTTCAAATCTTTTGCTCTGATGGGTACTTCAAATCTTCTCTTGTTTTTCTCTCTGATGAGCCTGTGTGCTATGGCGGCTTCCAAGGTGGTGCTTATTGGGAATAATATCACTCTCTCCTTTGATGATATTGAAGCTAATTTTGCCCCAGCAGTCAAAGGTTCTGGAAAATATGGGGTCTTATATTTGGCAGAACCACTGGATGCGTGTGCAGAATTGACAAATAAAGTTGAACAACTTCCCAATGCGAGTTCACCTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAATAGCACAAAAGGCTGGCTTCAAAGCTGTAATTGTCTATGACAATGAAGAGGGTGGCATCTTGGTTGCGATGGCAGGAAATTCTGCTGGTATAAGAATACACGCTGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTTGACTAATGTGGAAATATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTGCTAGCTATGTCTGCTGTCCTGGCCACTTGTTTCTTCGTCCGCAAGCATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCGAGTTTGGTATTTACTTCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGTGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCGTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCTAGAACCGGCTTAACTGATCCACCACCTTCAGAGTCCACACCCTTGCTCTCATCAACCCCAGCATCTATGGCATCCTCTGTCTTATCTTCTGCAAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCATCTATGGCATCCTCTGCCTTACCTTCTGCGAGATCATCTCTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCATCTATGGCATCCTCTGCCTTACCTTCTGCGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTTCCCGGGCAGCTTCACAGACCCCATCTGTTTCCCGTAACCACTCCATAGCCAGTACACCTTATGTTCAGCCATCTCTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCATCAGCCGAAGCACCGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCATGTTCCATGGGATACCCATCTTTGTCATCTCTTAACTCAAGGTACATGTCTCCACACATTCCAAGTCCAAGCAATGCTTCAGTAAGCTATATGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCGGCTGCAAGCTTCTCCCCATTTGCATCGACACACTCCCTTCCAGAATGTTAA 1533 0.4423 MFFNQKIVLFKSFALMGTSNLLLFFSLMSLCAMAASKVVLIGNNITLSFDDIEANFAPAVKGSGKYGVLYLAEPLDACAELTNKVEQLPNASSPFALVVRGGCSFEEKVRIAQKAGFKAVIVYDNEEGGILVAMAGNSAGIRIHAVFVSKASGEILKKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRKHRIRRERPRASLVREFHGMSSRLVKAMPSLVFTSVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSTPASMASSVLSSARSSLASSSAIQIARTASMASSALPSARSSLASSSAIQIARTASMASSALPSARSSLASSSAIQISRAASQTPSVSRNHSIASTPYVQPSLRSSYHQSPSLSISRSTVDLRNASQRSLASHLNSPCSMGYPSLSSLNSRYMSPHIPSPSNASVSYMGSSSHQQHPLRYSESAASFSPFASTHSLPEC* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1409 510 Gene3D - 36 170 - -
Gso20g1409 510 CDD PA_C_RZF_like 34 177 IPR044744 -
Gso20g1409 510 SUPERFAMILY RING/U-box 232 300 - -
Gso20g1409 510 CDD mRING-H2-C3H2C2D_ZSWM2 247 290 - -
Gso20g1409 510 ProSiteProfiles Zinc finger RING-type profile. 248 290 IPR001841 -
Gso20g1409 510 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 16 341 - -
Gso20g1409 510 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 366 441 - -
Gso20g1409 510 SUPERFAMILY PA domain 94 160 IPR046450 -
Gso20g1409 510 Pfam Ring finger domain 247 290 IPR001841 -
Gso20g1409 510 SMART ring_2 248 289 IPR001841 -
Gso20g1409 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 295 IPR013083 -
Gso20g1409 510 MobiDBLite consensus disorder prediction 472 491 - -
Gso20g1409 510 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 366 441 - -
Gso20g1409 510 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 16 341 - -
Gso20g1409 510 Pfam PA domain 95 156 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1409 Gso-Chr20 44260880 44266848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1409 35 509 C3H Transcription Factor Family AT1G22670 43.006 4.21e-108 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1409 K15692 - gmx:100793048 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1409 20 44260880 44266848 Gso10g1949 10 46459708 46465387 GST