Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1402 ATGAAGCTCCAAACACATCAACTGCTACTCTCCTTTGTGTTGTTCTCCGCTGTCATCATCTCCACAATTTCAGGAACCACCATCACCATCTCTCCGGGCACAACCCTATACGCTTCCAACACAACCCAATCATGGTCCTCTCCGAACGACACTTTCTCTCTCCACTTCCTCCCCCTCCACCCTCCAACTTTCCCTCCTTCCTTCACCGCCGCCGTTGTCCACTCCGGCGGTGCTCCCGCCGTCTGGTCGGCTGGAAACGGCGCTGCCGTCGACTCCGCCGCATCCTTCCAGTTCCTCCCCTCCGGCAACCTCGTCCTCGTTAACGGGTCGGGTTCCACCGTGTGGGACTCCGGAACTTCCAACATGGGTGTCTCCTCTGCCACCCTTCACGACAACGGAAACTTGGTTCTCTCCAATGCCACCAGTTCCGTGTGGTCGAGCTTCGACAACCCCACTGACACCATTGTTTCGTTTCAGAACTTTACTGTTGGTATGGTTTTGCGTTCTGGGTCGTTCTCATTTTCTGTTCTTAGTTCTGGGAACCTCACTCTCAAGTGGAGTGATAGTGTCCCTTACTGGGATCAAGGCTTGAACTTTTCCATGAGTGTGATGAATTTGAGTTCACCTGTTTTGGGGGTGGAACCAAAGGGGGTTTTGCAGCTTTTTTATCCCAATTTGAGTGCCCCTGTGGTGGTTGCTTATAGCAGTGACTATGGTGAAGGGAGTGATGTGTTGAGGGTTTTGAAGTTGGATGGTGATGGGAATTTGAGGGTTTATAGCTCTAAGAGGGGTAGTGGGACCGTGAGTTCAACATGGGTTGCTGTTGAGGATCAATGTGAGGTTTTTGGTTACTGTGGTCATAATGGTGTTTGTAGTTACAATGATTCTAGTTCTAGCCCCATTTGTGGATGTCCATCTCAGAATTTTGAGATGGTTAATCCTAGTGATAGTAGGAAAGGGTGTAGGAGGAAGGTGAGGCTTGAGGATTGTGTAGGGAAGGTGGCAATGTTGCAACTTGACCATGCTCAATTCTTGACTTATCCTCCTCAGTTTTTGATCAATCCTGAGGTGTTTTTCATTGGTATTTCAGCTTGCAGTGGAAATTGTCTTGCTGCTAATTCTTGTTTTGCTTCCACTTCCTTGTCTGATGGAAGTGGACTTTGTTACATAAAGACGTCAAATTTTATTAGTGGCTACCAGAATCCTGCTCTACCTAGCACTTCATATATCAAGGTTTGTGGACCAGTGGCTCCTAATTTGGCACCTTCGTTAGAGAATGCGCATTGGAGGTTACATGGTTGGGTAGCTCTTGTTGTTTTGAGTACCCTTTTATGTTTCCTTGTTTTTCAGGGTGGTTTATGGTTGTGGTGTTGTAGAAACAGGCAACGATTTGGAGGTTTTGCAGCTCAGTATACTCTTCTTGAGTATGCTTCTGGCGCACCGGTTCATTTCTCTTATAAGGAGCTTCAAAGGTCCACAAAAGGGTTCAAGGAGAAACTAGGTGATGGGGGGTTTGGTGCTGTTTATAAAGGAACTCTCTCTAATCAAACTGTTGTTGCGGTTAAGCAACTTGAGGGCATTGAACAGGGAGAGAAACAGTTTAGGATGGAAGTTTCTACCATAAGTAGTACCCATCATTTAAATTTAGTGAGGCTGATTGGTTTTTGCTCTGAAGGGCAACACAGGCTTCTAGTGTACGAGTTTATGAAAAATGGATCTCTTGATAATTTTCTTTTTGTTGATGAAGAACAACAGTCAGGGAAATTGTTGAACTGGGGGTATAGATTCAACATTGCTCTAGGTGCTGCTAAGGGCTTGACATACCTTCACGAGGAGTGTAGAAATTGCATTGTCCATTGCGATGTAAAACCTGAAAACATTCTTTTAGATGAGAATTACAATGCAAAAGTCTCAGATTTCGGCCTTGCAAAGCTCCTACGTCCAGTGGATTGCAGGCACCGGACCTTGACAAGTGTGAGAGGAACCAGAGGGTATCTAGCTCCCGAATGGCTAGCAAATCTTCCCATAACTTCCAAATCTGATGTTTACAGTTATGGCATGGTATTGTTGGAGATAGTGAGTGGTAGAAGGAACTTTGAAGTCTCAGAAGAAACAAGAAGAAGAAAGTTTTCAGTCTGGGCTTATGAAGAGTTTGAGAAAGGCAACATCATGGGAGTTATTGACAGAAGATTGGTTAACCAAGAAATCAACTTGGAGCCAGTGAAAAGAGTGCTTATGGCATGTTTTTGGTGCATACAGGAACAACCATCTCATAGGCCAACAATGAGCAAAGTGGTGCAAATGCTAGAAGGTGTGATAGATATTGAGAGGCCACCAGCCCCAAAAATCAATAGCAATGCCGCTCCTATCTCCACTATTGCAACTTCATCAGCTCCAAATTACTCCTCATCTTCATCTTTGTTTACTTTTGAGGCTTCTCCCTTGGCTCTTGCAATATCCTAG 2463 0.4527 MKLQTHQLLLSFVLFSAVIISTISGTTITISPGTTLYASNTTQSWSSPNDTFSLHFLPLHPPTFPPSFTAAVVHSGGAPAVWSAGNGAAVDSAASFQFLPSGNLVLVNGSGSTVWDSGTSNMGVSSATLHDNGNLVLSNATSSVWSSFDNPTDTIVSFQNFTVGMVLRSGSFSFSVLSSGNLTLKWSDSVPYWDQGLNFSMSVMNLSSPVLGVEPKGVLQLFYPNLSAPVVVAYSSDYGEGSDVLRVLKLDGDGNLRVYSSKRGSGTVSSTWVAVEDQCEVFGYCGHNGVCSYNDSSSSPICGCPSQNFEMVNPSDSRKGCRRKVRLEDCVGKVAMLQLDHAQFLTYPPQFLINPEVFFIGISACSGNCLAANSCFASTSLSDGSGLCYIKTSNFISGYQNPALPSTSYIKVCGPVAPNLAPSLENAHWRLHGWVALVVLSTLLCFLVFQGGLWLWCCRNRQRFGGFAAQYTLLEYASGAPVHFSYKELQRSTKGFKEKLGDGGFGAVYKGTLSNQTVVAVKQLEGIEQGEKQFRMEVSTISSTHHLNLVRLIGFCSEGQHRLLVYEFMKNGSLDNFLFVDEEQQSGKLLNWGYRFNIALGAAKGLTYLHEECRNCIVHCDVKPENILLDENYNAKVSDFGLAKLLRPVDCRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFEVSEETRRRKFSVWAYEEFEKGNIMGVIDRRLVNQEINLEPVKRVLMACFWCIQEQPSHRPTMSKVVQMLEGVIDIERPPAPKINSNAAPISTIATSSAPNYSSSSSLFTFEASPLALAIS* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1402 820 Gene3D - 150 272 IPR036426 -
Gso20g1402 820 Pfam S-locus glycoprotein domain 241 305 IPR000858 GO:0048544
Gso20g1402 820 CDD STKc_IRAK 500 771 - -
Gso20g1402 820 Pfam Protein kinase domain 497 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1402 820 PIRSF SRK 1 814 IPR024171 GO:0004674
Gso20g1402 820 PANTHER OS07G0415500 PROTEIN 12 812 - -
Gso20g1402 820 Gene3D Phosphorylase Kinase; domain 1 467 568 - -
Gso20g1402 820 ProSiteProfiles Bulb-type lectin domain profile. 21 150 IPR001480 -
Gso20g1402 820 ProSiteProfiles EGF-like domain profile. 275 315 IPR000742 -
Gso20g1402 820 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 12 812 - -
Gso20g1402 820 ProSiteProfiles Bulb-type lectin domain profile. 152 271 IPR001480 -
Gso20g1402 820 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Gso20g1402 820 SUPERFAMILY Protein kinase-like (PK-like) 477 770 IPR011009 -
Gso20g1402 820 Gene3D Transferase(Phosphotransferase) domain 1 569 782 - -
Gso20g1402 820 SMART blect_4 36 151 IPR001480 -
Gso20g1402 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 196 IPR036426 -
Gso20g1402 820 SMART serkin_6 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1402 820 CDD B_lectin 29 151 IPR001480 -
Gso20g1402 820 Gene3D - 22 149 IPR036426 -
Gso20g1402 820 Pfam D-mannose binding lectin 81 163 IPR001480 -
Gso20g1402 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Gso20g1402 820 ProSiteProfiles Protein kinase domain profile. 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1402 Gso-Chr20 44191291 44194216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1402 416 779 Receptor kinase-like Gene Family AT5G20050 38.947 8.24e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso20g1402 Pkinase 8.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1402 - - gmx:100810753 1610.51