Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1396 ATGGAGAGAAAGTTCATGGCTTTAGGTTTCATTTGGTGGGTGGTGTTGGTTCATCCACTATGCCTGATTTCTGCTAACATGGAAGGAGATGCTTTGCATAGTCTGAGGACAAACTTACAGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGGAATGCTGCACTGTCTGGTCAACTTGTTCCGCAGCTTGGTCAGCTCAAGAATTTGCAGTATTTGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGCCCAATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTTCGGCTTAACAATAACAGCTTGTCAGGTCCTATCCCCATGTCACTGACTAATATTACAGCTCTCCAAGTTCTGGATTTGTCTAATAATCATCTATCAGGAGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTGCAAACAACTTGGATCTATGTGGACCTGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCTCCACCTCCAATTTCTGCCCCAGGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTCCATCTGGGACAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATAGTTTCAGTAATAAGAACATTCTTGGGAGGGGAGGATTTGGTAAGGTGTACAAAGGACGTTTGGCAGATGGTTCATTGGTGGCTGTGAAAAGATTGAAAGAGGAACGCACACCAGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTTCGACTACGTGGGTTCTGTATGACACCAACAGAAAGGCTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCATGCTTAAGAGAGCGTCCTCCACATCAAGAACCCCTGGATTGGCCAACTAGAAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCGAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGCTGGATGAAGAGTTTGAGGCTGTTGTTGGGGACTTTGGATTGGCCAAACTTATGGATTACAAGGACACGCATGTGACAACTGCTGTACGGGGAACTATTGGGCATATAGCTCCTGAGTACCTCTCCACCGGTAAATCTTCAGAGAAAACTGACGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATAACTGGACAGAGAGCTTTTGACCTTGCTCGACTCGCTAATGACGATGATGTTATGCTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACAAAACAACTATATAGAAGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTCTGCACACAAGGTTCCCCGATGGACCGACCAAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTCCGGCAGGAGGTGGAGCTGGCCCCTCATCCTAATTCTGATTGGATCGTCGACTCAACCGAAAATCTGCATGCAGTAGAGTTATCTGGTCCAAGGTGA 1875 0.4517 MERKFMALGFIWWVVLVHPLCLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNHFTGPIPDSLGKLSKLRFLRLNNNSLSGPIPMSLTNITALQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGGNGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1396 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Gso20g1396 624 SUPERFAMILY L domain-like 28 191 - -
Gso20g1396 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1396 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Gso20g1396 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Gso20g1396 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1396 624 Pfam Protein kinase domain 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1396 624 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 13 624 IPR031048 GO:0004675|GO:0005102|GO:0006468
Gso20g1396 624 CDD STK_BAK1_like 307 578 - -
Gso20g1396 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Gso20g1396 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 624 - -
Gso20g1396 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Gso20g1396 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Gso20g1396 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1396 Gso-Chr20 44125779 44133051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1396 1 624 Receptor kinase-like Gene Family AT1G71830 89.120 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso20g1396 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1396 K13418 - gmx:100789884 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1396 20 44125779 44133051 Gso10g1959 10 46602831 46609919 GST
Gso2g0630 2 6552824 6559312 Gso20g1396 20 44125779 44133051 PCT
Gso20g1396 20 44125779 44133051 Gso2g0630 2 6552824 6559312 PCT