Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1395 ATGGAAAACCTTCCACCATTGATGTGCAAAAACCTCATTAGAAAAAGAACCTCTAGGCGATCTACAATGTATCTTGGTGTGAGAAAAAGGCCATGGGGAAGATACGCTGCTGAGATTAGGAACCCATATACCAAAGAGAGACGCTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCTATAGCTTATGATCTTTCATCTATCAAGATTTGTGGCATTAATGCTCGAACTAATTTTCACTACCCTTTTGTGTCTCTTCCACCACCTCCTATGTCGTTGCCTCCTCCACCGCCACCGCCGACCCCGGAGTTGGATCCAAGTGTTGAAGTTTGTCCAGAGATGAATGCTGCTTACGATGGCGATGATGAATCTCTGGTCATTGCTTCCATTTTGCAAAGTTTTTCTAATACTGGTAACTGTTCATTTTAG 429 0.4406 MENLPPLMCKNLIRKRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERRWLGTFDTAEEAAIAYDLSSIKICGINARTNFHYPFVSLPPPPMSLPPPPPPPTPELDPSVEVCPEMNAAYDGDDESLVIASILQSFSNTGNCSF* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1395 142 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gso20g1395 142 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gso20g1395 142 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Gso20g1395 142 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gso20g1395 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 133 - -
Gso20g1395 142 CDD AP2 24 79 IPR001471 GO:0003700|GO:0006355
Gso20g1395 142 Pfam AP2 domain 25 70 IPR001471 GO:0003700|GO:0006355
Gso20g1395 142 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 133 - -
Gso20g1395 142 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Gso20g1395 142 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1395 Gso-Chr20 44105950 44106535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1395 24 95 AP2-EREBP Transcription Factor Family AT1G12890 67.568 1.25e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1395 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1395 - - gmx:100816937 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1395 20 44105950 44106535 Gso10g1961 10 46625971 46626730 GST