Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1390 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATCGAAATCTGCCAAGAGGTTGGCCCAGTAGTCTCATTCAGACTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTACAAGGATGAAGAGACGGCTTTGAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGGGTCGTGGCGGTCCTGGAATGACAACAAATGTTGACCATCAGAAACAAGTTGGTGTCCCAGCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAACAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACAGAGATTATCTCTGAGCTGAAGGGAATGGCTACTCAAAACAAAGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCGCAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCTGATCAAACCTCACAGTCTTCAATGAATGAAGGCCAGCTGGGTCAGGCATCATTGGTTCAAACTCTGTCAGGCCTTCCTCATGGGCAGGACAAGTTGCAGCCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGGCTCCTAGTCAATTAACTGCGCATCCAAAGCCTCCAGTGCAGCCTCGGATTCCCCTTCAGCAAAATCCAAACAATCTTGTACTGCCAGGAACATTGTCTGGGCAGTCTAATTTAATGCTTCCTTCTGCACGTTCTCCAGGTTTGGGAAGTTTGTCTGTTAGGCCTCCAATTCAACTGGCAACTTCAACTGCTCTAAACCAGCAAATGCATGCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATGTTCAAATGGTTCGTCCAGACGCCAACTTTCAGCCTGGCCCCTCCATGTCAACAACTAATTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAACTAATACATATTCAAAATCAAACATTCCTTTGGGAGTAGAGAAAACAAACATGGTTCGTGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTTATGAAATTGGATGAGGGAAGGAGCACCCCTCTTTCTGCAGGGATTTTGGATATGCCTGTCACCGATGGATCATCTCATATCCTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTAAGTTCCTTGCCACCAGATCAGCAACAACAGGTCCTTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATACAGCCCTCATAA 1659 0.4581 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDHQKQVGVPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSSMNEGQLGQASLVQTLSGLPHGQDKLQPGLTPYAQEGQVNTIPHNPLAPSQLTAHPKPPVQPRIPLQQNPNNLVLPGTLSGQSNLMLPSARSPGLGSLSVRPPIQLATSTALNQQMHASLLQHSVHVGNSTVGHNVQMVRPDANFQPGPSMSTTNSQLLSKGDKSSKVIEDLNWAKRTNTYSKSNIPLGVEKTNMVRDSSESFTRPSKVMKLDEGRSTPLSAGILDMPVTDGSSHILGRSSLPVHAAPKAEGQYSEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPDQQQQVLQLQQALRRDQIQPS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1390 552 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 547 - -
Gso20g1390 552 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Gso20g1390 552 Gene3D - 151 232 - -
Gso20g1390 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Gso20g1390 552 Pfam Transcription termination and cleavage factor C-terminal 514 546 IPR026896 GO:0031124
Gso20g1390 552 SMART rrm1_1 10 83 IPR000504 GO:0003723
Gso20g1390 552 MobiDBLite consensus disorder prediction 85 108 - -
Gso20g1390 552 MobiDBLite consensus disorder prediction 390 407 - -
Gso20g1390 552 Gene3D - 1 115 IPR012677 -
Gso20g1390 552 MobiDBLite consensus disorder prediction 384 408 - -
Gso20g1390 552 CDD RRM_CSTF2_CSTF2T 11 85 - -
Gso20g1390 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Gso20g1390 552 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Gso20g1390 552 Gene3D - 507 549 IPR038192 -
Gso20g1390 552 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1390 Gso-Chr20 44056941 44064423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1390 11 165 Eukaryotic Initiation Factors Gene Family AT1G22760 26.923 2.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1390 K14407 - gmx:100806489 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1390 20 44056941 44064423 Gso10g1965 10 46655226 46668133 GST