Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1389 ATGGGTGAGGCTTCGGGAGCTGGTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCCACGGATGAGGAGTTGGTGATGTACTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCGACGTGATTCATGAAACCGATGTGTATAAGTGGGATCCCGAGGATTTGCCTGGGCAATCTATATTGAAAACGGGAGATAGGCAATGGTTCTTTTTCTGTCACAGAGATAGGAAATATCCTAATGGTGGAAGGTCTAACCGAGCAACCAGACGTGGGTATTGGAAAGCAACAGGAAAGGATCGTAACGTGATATGCAATTCTAGGTCAGTTGGAGTGAAAAAGACCCTGGTTTTCTACGCAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAGCAGTATGGTGCACCATTTAATGAAGAAGAGTGGGCAGATGATGACATAGTAGATTTTAATATTAACTCAGCTGATCGGGAGGCTCCAAATGATGTTGCTGATAATGTTAATGTACCACTGCCTTTTCTTGATGATGAAATCAATAACATCATTAGGGGAATTTTGGATGATGAGCTTGTCCTAGATCAGCAGCATGTGAATGGCTATCCTGACTTTCCTCAGGTTGTTAGTGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCTGAGGATGTGATGCTCCCTGAACCAGTCAGAATCTCACATCCTAGCTGCCAATTTTTTGATGCACAGCCTAGCTTTGACTTCAATCGGCCAGTTACTTCTCATCTGCATGTTTCTGAAACATCTGAGGTCACTTCTGCTTCCAACATTAAAACAAAGGAGCTTGACTTTAATGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATACTGAACCTACATTGTCAAATGTTGAAAATTCTGTGGAGTACCAGCATTTTGAAGATGGGTTAAGTGAACTTGATTTGTTCCAAGATGCACAGATGTTTCTTCGTGACTTGGGGCCAATTATTCATGAAACAGATTCACATGCATATACAAATGCCCTTGTCAGCAGCAGCAATATTGAATGTCAAAGTTACCAATTGCTGCCAAATCCAGAGGATGCCAATCAAACTGTTGGTGAATTCTGGATGCATGGTGAAAGTAATCAGCTATCATCCCCAGGTGTTGTATATGAATCTGTTGGCTTTCCTACGGAAGGCAATAACAATCAAAGTAGCACTGTGGAAGATGTTGCTACAAGTAGCTTGTCCTCTGCTCTCTGGGCCTTTGTTGAGTCAATACCTACTACTCCTGCATCAGCTGCTGAAAGTGCATTGGTGAACCGAGCTTTGAATCGAATGTCTAGCTTCAGCAGGTTGAAGATCAAGCACACCAACATTGCTGCATCAGGTAAAGACACTGGAACTATGAAGAGAGCTGGCAGAAAGGGACTTCCATTCCTTTTCTTCTCTATTCTTATTGCTTTATGTGCTTTTTGTTGGGTTTTTGTTGGAAACTTAAGACTAGTAGGTAGAAGTATTTCTCCTTGA 1653 0.4283 MGEASGAGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLDVIHETDVYKWDPEDLPGQSILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKDRNVICNSRSVGVKKTLVFYAGRAPSGERTDWVMHEYTLDEEELKRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFNEEEWADDDIVDFNINSADREAPNDVADNVNVPLPFLDDEINNIIRGILDDELVLDQQHVNGYPDFPQVVSEETQSTVVDQFSEDVMLPEPVRISHPSCQFFDAQPSFDFNRPVTSHLHVSETSEVTSASNIKTKELDFNEDGFLEINDLIDTEPTLSNVENSVEYQHFEDGLSELDLFQDAQMFLRDLGPIIHETDSHAYTNALVSSSNIECQSYQLLPNPEDANQTVGEFWMHGESNQLSSPGVVYESVGFPTEGNNNQSSTVEDVATSSLSSALWAFVESIPTTPASAAESALVNRALNRMSSFSRLKIKHTNIAASGKDTGTMKRAGRKGLPFLFFSILIALCAFCWVFVGNLRLVGRSISP* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1389 550 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Gso20g1389 550 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Gso20g1389 550 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 549 - -
Gso20g1389 550 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Gso20g1389 550 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Gso20g1389 550 PANTHER NAC TRANSCRIPTION FACTORS 2 18 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1389 Gso-Chr20 44048381 44052508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1389 12 548 NAC Transcription Factor Family AT1G34190 46.484 4.29e-135 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso20g1389 NAM 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1389 - - gmx:100787232 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1389 20 44048381 44052508 Gso10g1966 10 46672865 46676971 GST