Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1380 ATGGCGGCGGCGATTTCTTCACCGATGGCTCAGTCTGTGGCGGCGGCGGCGACTCCAGTAATAGCTCCGGGAGTCGCATTGGGCGGAGGTCCCTTTGCGAATGCGTCTCTGTACGTGGGCGATCTCGAGGGGAATGTAAATGAGGAGCAACTTTATGATCTGTTCAGCCAGGTGGCTCAGATTGCTTCAATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTTGGTTATGCCTATGTCAACTTTGCCAACGCTCAGGACGCATCCAATGCCATGGAACTTCTGAACTTCACTCCTCTGAATGGAAAACCGATTCGAATTATGTTTTCCCAACGTGATCCAAGCATTCGGAAAAGCGGACATGGCAATGTGTTCATTAAGAACCTGGATACATCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCACTGTACTTTCTTGTAAGGTGGCTCTTGACAGCAGTGGCCAGTCAAAAGGGTATGGTTTTGTTCAGTTTGACAATGAAGAGGCTGCCCAGAATGCAATCAAACGATTGAACGGCATGTTGATAAATGATAAACAAGTCTACGTTGGACTCTTTATTCGGCGCCAGGAAAGGGAGCAGACAAATGGATCACCCAAGTTCACTAATGTATATGTGAAAAATTTGTCTGAAACATATACTGATGAGGACCTGAAGAAGCTATTTGGCCCCTATGGTACAATAACCAGTGCAACAGTTATGAAAGATGTGAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTCCAGAATCCGGATTCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACTACTATTAACAATGACAGGGTTTTATATGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGGCCGAGTTGAAAGCAAAAATTGAGCAGGAAAGAATCAGTAGATATGAAAAATTACAAGGTGCTAATTTGTACCTGAAAAATCTTGATGACAGTTTCAGTGATGAGAAGTTGAAGGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTGATGATTGATTCAAATGGACGGAGTAAGGGGTCTGGTTTTGTTTCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCTCTATATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCATCTACAGGCTCAATTTGCTCAAATTCGAGCACCTGGTGGAATGGCACCTCTGCCTGCTGGTATTCCTTTATATCATCCAGGGGCACCGAGACTTGCCCCCCAACAGTTGTATTATGGTCAAGGCACACCTGGCTTTATGCCACCACAGCCTGCTGGATTTTCTTTCCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGTGTCGCCCCCAATTTCATTATGCCTTACCACCTTCAGAGACAGGGTCAGCTTGGGCAGAGGACGGGTGTTCGTAGAAATGGAAACTTCCAACAGGTGCAACAGAACCAGATGCTACATCGTAACTCCAACCAAGGATTTAGATACATGCCCAATGGTCGAAATGGCATGGATCCATCTTTAGTTCCTCACGGTCTTATGGGTCCCATGATGCCTATGCCCTTTGATGGTTCTGGAGTCACTGCAGCCCCTAATGATAATCAGCGTCCTGGAGCATTGTCTACCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTATATCCCCTTGTGGAACGACTCGCACCAAACCAATATACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAAGTAATCAATCTCATTGAATCTCCTGAGGACCTGAAGACAAAGGTGTCGGAGGCAATGCAGGTCCTGCATGAGGTTGCATCTGGTTCTGAAGTTGATCAGCTTGGCTCGATGTCGTTGAATGAATGA 1959 0.462 MAAAISSPMAQSVAAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQMLHRNSNQGFRYMPNGRNGMDPSLVPHGLMGPMMPMPFDGSGVTAAPNDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLHEVASGSEVDQLGSMSLNE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1380 652 Gene3D - 31 123 IPR012677 -
Gso20g1380 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Gso20g1380 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Gso20g1380 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 283 IPR000504 GO:0003723
Gso20g1380 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Gso20g1380 652 SUPERFAMILY PABC (PABP) domain 511 637 IPR036053 GO:0003723
Gso20g1380 652 CDD RRM3_I_PABPs 213 293 - -
Gso20g1380 652 Pfam Poly-adenylate binding protein, unique domain 568 633 IPR002004 GO:0003723
Gso20g1380 652 CDD RRM4_I_PABPs 317 395 - -
Gso20g1380 652 SUPERFAMILY RNA-binding domain, RBD 35 204 IPR035979 GO:0003676
Gso20g1380 652 CDD RRM1_I_PABPs 36 115 - -
Gso20g1380 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Gso20g1380 652 SUPERFAMILY RNA-binding domain, RBD 213 399 IPR035979 GO:0003676
Gso20g1380 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Gso20g1380 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Gso20g1380 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Gso20g1380 652 CDD RRM2_I_PABPs 121 196 IPR045305 -
Gso20g1380 652 SMART rrm2_1 319 391 IPR003954 GO:0003676
Gso20g1380 652 SMART rrm2_1 36 109 IPR003954 GO:0003676
Gso20g1380 652 SMART rrm2_1 124 196 IPR003954 GO:0003676
Gso20g1380 652 SMART rrm2_1 215 287 IPR003954 GO:0003676
Gso20g1380 652 Gene3D - 559 637 - -
Gso20g1380 652 PANTHER POLYADENYLATE-BINDING PROTEIN 30 641 - -
Gso20g1380 652 Gene3D - 124 197 IPR012677 -
Gso20g1380 652 SMART rrm1_1 319 391 IPR000504 GO:0003723
Gso20g1380 652 SMART rrm1_1 36 109 IPR000504 GO:0003723
Gso20g1380 652 SMART rrm1_1 215 288 IPR000504 GO:0003723
Gso20g1380 652 SMART rrm1_1 124 196 IPR000504 GO:0003723
Gso20g1380 652 Gene3D - 305 406 IPR012677 -
Gso20g1380 652 Gene3D - 198 304 IPR012677 -
Gso20g1380 652 Coils Coil 287 315 - -
Gso20g1380 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 633 IPR006515 GO:0003723
Gso20g1380 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 560 638 IPR002004 GO:0003723
Gso20g1380 652 SMART poly_2 572 636 IPR002004 GO:0003723
Gso20g1380 652 PANTHER RNA BINDING PROTEIN 30 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1380 Gso-Chr20 43965372 43969693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1380 34 652 Eukaryotic Initiation Factors Gene Family AT1G71770 58.044 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1380 K13126 - gmx:100783163 1263.44