Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1377 ATGGAAAACATTGTTCCCCATAGTGTTACCACTTTGTTATTTTCCTTGTTATTCTTCTGCCTCACCCTGACAACAAAGATAGGAGTCACTTGTCTCTCCCCTGATGGACAAGCCCTTCTTTCTCTTCTACCTGCTGCAAGATCATCACCTTCTGTTCTCTCCTCATGGAACCCTTCAAGCTCAACACCTTGTTCATGGAAAGGCATCACTTGCTCCCCACAAGGTAGAGTCATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGCTTCAACTTCTTAATCTTTCTTCAACCAATGTCTCTGGCTCCATTCCACCCTCTTTTGGTCAACTTTCTCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGGCTCTCTTCTCTTCAATTCCTTTACTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCCAATCTCACTTCCCTTGAAGTTTTTTGCCTCCAAGACAATCTTCTTAACGGTTCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTACGGATCGGGGGCAATCCATATCTCACCGGACAAATCCCCTCACAGTTGGGCCTACTCACCAACCTCACCACTTTTGGTGCAGCTGCCACTGGACTTTCTGGTGTCATTCCCTCTACATTTGGTAACTTGATCAATCTACAAACTCTAGCACTTTATGATACTGAAATTTCTGGTTCAATACCACCAGAACTTGGGTCGTGTTCGGAGCTGAGAAATCTGTACCTACACATGAACAAGCTCACTGGCTCTATCCCTCCTCAATTGAGCAAGTTGCAAAAGCTTACTAGCTTGCTACTTTGGGGAAATTCCTTAACTGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCATCGCTTGTTATATTTGATGTCTCTTCTAATGATCTCTCTGGTGAAATACCTGGGGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTTCATCTATCAGACAATTCACTCACAGGTAAAATACCATGGCAGTTGGGCAACTGCACCAGCCTTTCCACTGTTCAGCTTGACAAGAATCAGTTATCAGGTACTATTCCATGGGAGTTAGGCAAATTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGTAATTTAGTGTCTGGAACCATACCATCCTCTTTTGGAAACTGCACAGAACTATATGCACTTGACCTTTCAAGGAACAAGCTGACAGGTTCTATACCAGAACAGATTTTCAGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAAGGTTGCCATCAAGTGTTTCAAATTGCCAGTCTTTAGTGAGGCTGAGGGTTGGAGAAAACCAACTTTCGGGACAGATTCCGAAAGAGATAGGCCAATTGCAGAATCTGGTGTTCCTTGACTTGTACATGAATCATTTCTCTGGAAGCATACCGGTGGAGATTGCCAACATCACAGTTCTTGAGCTGTTAGATATTCACAACAACTACCTCACTGGGGAAATTTCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGATAGGTGAAATTCCTTGGAGCTTTGGAAACTTCAGCTATTTGAACAAGCTCATCCTCAATAACAACTTGCTGACAGGGTCAATCCCAAAATCCATTAGAAATTTGCAGAAGCTAACTCTTCTGGATTTGAGTTACAACAGCCTCTCTGGTGGCATACCCCCTGAGATTGGTCATGTTACAAGCTTAACCATCAGTTTGGACTTGAGCTCAAACGAATTTACCGGAGAAATCCCAGATTCAGTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAATATGCTTTATGGAGGAATCAAGGTTCTGGGGTCTCTAACTAGCCTCACTTCTCTCAATATCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTCTATCTTGTATTTCATATCTTCAGAACCCCCAGCTTTGTCAGTCAATGGATGGGACATCATGTTCTTCAAGCCTGATTCAAAAAAATGGTTTGAAATCCGCAAAAACGATAGCTTGGGTCACAGTCATTCTAGCCTCAGTTACTATAATTCTCATTTCATCCTGGATTCTAGTAACTCGCAATCACGGATACAAGGTTGAAAAAACACTGGGAGCATCAACTTCCACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATTGACGATATCTTGGATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGTTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCGAATGGGGAGTTGATAGCAGTGAAGAAGCTGTGGAAAGCAAGCAAAGCAGACGAAGCCGTGGATTCTTTTGCTGCAGAGATTCAGATTCTTGGATACATTCGGCATAGGAACATTGTGAGGCTCATAGGTTATTGTTCTAACGGGAGTGTTAATCTTCTTCTCTATAACTACATCCCAAATGGTAATCTGCGACAGCTTTTACAAGGGAACAGGAACCTAGACTGGGAAACAAGATACAAGATTGCAGTTGGATCAGCTCAAGGTCTAGCTTACCTTCACCATGATTGTGTCCCTGCAATTCTCCATAGAGATGTGAAATGCAATAACATACTTCTAGACTCCAAATTTGAGGCATATCTGGCAGATTTTGGTCTTGCAAAGCTAATGCATTCACCAACTTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTTTGCTAGAGATACTAAGCGGGCGCAGTGCTGTTGAATCTCATGTTGGAGATGGCCAACACATAGTGGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTGTATCAATACTAGACACAAAGCTCCAAGGTCTGCCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGCATTGCTATGTTTTGCGTGAACTCTTCCCCAACGGAGCGCCCCACGATGAAGGAAGTGGTTGCACTACTTATGGAGGTGAAGAGCCAGCCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTCAAATCAAAGCTGA 3240 0.4343 MENIVPHSVTTLLFSLLFFCLTLTTKIGVTCLSPDGQALLSLLPAARSSPSVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGRLSSLQFLYLNSNRLTGSIPQHLSNLTSLEVFCLQDNLLNGSIPSQLGSLTSLQQLRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGVIPSTFGNLINLQTLALYDTEISGSIPPELGSCSELRNLYLHMNKLTGSIPPQLSKLQKLTSLLLWGNSLTGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLGNCTSLSTVQLDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEQIFSLKKLSKLLLLGNSLTGRLPSSVSNCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDIHNNYLTGEISSVIGELENLEQLDLSRNSLIGEIPWSFGNFSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNSLSGGIPPEIGHVTSLTISLDLSSNEFTGEIPDSVSALTQLQSLDLSHNMLYGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSCISYLQNPQLCQSMDGTSCSSSLIQKNGLKSAKTIAWVTVILASVTIILISSWILVTRNHGYKVEKTLGASTSTSGAEDFSYPWTFIPFQKVNFSIDDILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEAVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVNLLLYNYIPNGNLRQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMHSPTYHHAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPTERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSSNQS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1377 1079 SUPERFAMILY L domain-like 442 691 - -
Gso20g1377 1079 Gene3D Ribonuclease Inhibitor 284 381 IPR032675 -
Gso20g1377 1079 ProSiteProfiles Protein kinase domain profile. 782 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1377 1079 Gene3D Ribonuclease Inhibitor 477 573 IPR032675 -
Gso20g1377 1079 MobiDBLite consensus disorder prediction 1059 1079 - -
Gso20g1377 1079 PRINTS Leucine-rich repeat signature 126 139 - -
Gso20g1377 1079 PRINTS Leucine-rich repeat signature 629 642 - -
Gso20g1377 1079 PANTHER - 8 1075 - -
Gso20g1377 1079 Pfam Leucine rich repeat 391 449 IPR001611 GO:0005515
Gso20g1377 1079 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Gso20g1377 1079 Pfam Leucine Rich Repeat 582 603 IPR001611 GO:0005515
Gso20g1377 1079 Pfam Leucine Rich Repeat 534 556 IPR001611 GO:0005515
Gso20g1377 1079 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Gso20g1377 1079 Gene3D Phosphorylase Kinase; domain 1 756 859 - -
Gso20g1377 1079 MobiDBLite consensus disorder prediction 1062 1079 - -
Gso20g1377 1079 SUPERFAMILY Protein kinase-like (PK-like) 766 1054 IPR011009 -
Gso20g1377 1079 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Gso20g1377 1079 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Gso20g1377 1079 Gene3D Ribonuclease Inhibitor 574 700 IPR032675 -
Gso20g1377 1079 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Gso20g1377 1079 Gene3D Ribonuclease Inhibitor 382 476 IPR032675 -
Gso20g1377 1079 SMART LRR_sd22_2 147 173 - -
Gso20g1377 1079 SMART LRR_sd22_2 532 561 - -
Gso20g1377 1079 SMART LRR_sd22_2 123 144 - -
Gso20g1377 1079 SMART LRR_sd22_2 629 654 - -
Gso20g1377 1079 SMART LRR_sd22_2 580 595 - -
Gso20g1377 1079 Gene3D Transferase(Phosphotransferase) domain 1 860 1076 - -
Gso20g1377 1079 Gene3D Ribonuclease Inhibitor 190 283 IPR032675 -
Gso20g1377 1079 SUPERFAMILY RNI-like 105 511 - -
Gso20g1377 1079 Pfam Protein kinase domain 784 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1377 1079 PANTHER UNNAMED PRODUCT 8 1075 - -
Gso20g1377 1079 SMART LRR_typ_2 532 555 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 340 364 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 171 195 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 292 316 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 412 436 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 244 268 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 123 147 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 629 656 IPR003591 -
Gso20g1377 1079 SMART LRR_typ_2 580 604 IPR003591 -
Gso20g1377 1079 SMART serkin_6 782 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1377 Gso-Chr20 43946043 43950356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1377 29 1073 Receptor kinase-like Gene Family AT5G56040 44.789 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso20g1377 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1377 - - gmx:100804889 1991.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1377 20 43946043 43950356 Gso10g1976 10 46737177 46741535 GST