Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1371 ATGCCGGAATCGGAGACAGGGACGCCGACGGCGGCGTCGGTGCCGGCGACGCCGGATACTCCGGGAGGACCCTTATTCACGTCGCTGCGAGTTGACTCACTGTCGCACGAGCGAGACTCGTTCGCAATGGCACGGTGCAAGTGTTTGCCGACCAAGGGCCATATCTGCTTCACTGATTTCTCAGTTGGTGTTCCACTTCCCAATGTTTCTCTCACTCAAAAGGTTGGAGCAGAGTTTGTGGGGACTTTCATATTGATATTTGCTGCAACTGCTGGACCAATAGTGAACAACAAGTACAATGGAGTAGAGACTCTAATGGGAAATGCAGCTTGTGCAGGGCTAACAGTGATGTTCATTATTCTCTCCATTGGCCACATCTCGGGTGCACACCTGAACCCATCCCTCACCATTGCCTTCGCGGCCTTTCGCCACTTCCCTTGGGCCCATGTCCCAGCCTACATAGCAGCACAAGTCTCTGCCTCCATCTGTGCCTGTTATGCTCTCAAAGGTGTTTACCACCCTTTCCTTTCTGGTGGGGTCACTGTCCCTACCGTCAGCGTCGCCCAGGCTTTCGCGACTGAGTTCATCATCACTTTTATTCTCTTGTTTGTTGTCACTGCTGTGGCCACTGATACTCGTGCGGTTGGTGAATTGGCAGGCATTGCTGTCGGAGCTACAGTTCTACTCAACATTCTCATATCAGGACCAACAAGTGGTGGTTCGATGAATCCGGTGCGCACGTTGGGTCCAGCTGTTGCAGCAGGAAATTACAAGCATATATGGATCTATTTGGTGGCACCAACGTTGGGTGCTCTGGCTGGTGCTGGTGTTTACACACTCGTCAAGCTGCGTGACAACGAGGCCGAACCGCCGAGACAAGTTAGGAGTTTCCGTCGCTAG 900 0.5289 MPESETGTPTAASVPATPDTPGGPLFTSLRVDSLSHERDSFAMARCKCLPTKGHICFTDFSVGVPLPNVSLTQKVGAEFVGTFILIFAATAGPIVNNKYNGVETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKGVYHPFLSGGVTVPTVSVAQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDNEAEPPRQVRSFRR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1371 299 MobiDBLite consensus disorder prediction 1 24 - -
Gso20g1371 299 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 PANTHER AQUAPORIN NIP2-1 10 297 IPR034294 -
Gso20g1371 299 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Gso20g1371 299 Gene3D Glycerol uptake facilitator protein. 66 294 IPR023271 -
Gso20g1371 299 MobiDBLite consensus disorder prediction 1 15 - -
Gso20g1371 299 PANTHER AQUAPORIN NIP5-1-RELATED 10 297 - -
Gso20g1371 299 Pfam Major intrinsic protein 69 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso20g1371 299 SUPERFAMILY Aquaporin-like 70 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1371 Gso-Chr20 43873066 43880037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1371 25 299 Major Intrinsic Protein MIP AT4G10380 75.445 1.10e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1371 K09874 - gmx:100804356 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1371 20 43873066 43880037 Gso10g1980 10 46792134 46798460 GST