Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1363 ATGGGCTGTGTTCAGGCCAAGCCATTGGATTTGGAAGAAGGTCCAGAATACAGGACCCTAGACAGGTTGAAGTTGGATAATGGCTGTGTGCCAAGTACCGACTTTGTTGCTCATAGAAGATCCACCGGTCAAAGACATCATGAACCTAATAAGGAGTATGAAAGGCTGCATCAGAGAAGAGAACAACCCAGAAAGCAAACTAATGAACTTATTGAGTCTGGTGTTGCCAATGCTGAAGGGCTTCATCATAAGGGCAAGGTGGTTGGAAGACAGGGGAGGAGAGTCACACGTCGTGATGATAAGAACTTGGCAAACCAGTGTTGCTTTGAGGATGATATGGTTGATGGGTGGCCAAAGTGGTTGGTTGATAATGTTCCTACACAAGTGTTGGCTGGCTTGGTTCCCAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTGGATCAAGAAACAGGAGAAATTGTGGCCCTGAAGAAGGTTAAATTCAATACATCAGAGCCTGAAAGCATTAAGTTTATGGCAAGAGAAATTATGATATTACAGAGACTGGATCATCCCAATGTATTAAAACTCATAGGATTAGCCACTTCACGAATGCAATACAGTATATATCTAGTTTTTGACTTCATGCAAACAGATTTGGCAGTTATTGCTCGTCCTGAAGAGAGACTAACTGAACCACAGGTCAAGTGCTATATGCATCAATTTCTTTCAGGTCTTCAGCATTGCCATGACAGGGGAATTCTGCATCGAGATATAAAGGGGTCAAACCTTTTGATTGACAAAAATAGGATGCTTAAGATTGCAGATTTTGGTCTAGCCAATTTTTATGGACCAGAGCGTCACCAGCCTCTCACAAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTATTGTTAGGTGACACAGAGTATGGAGTTGGTGTTGATCTATGGAGTGCTGGATGTCTCCTGGCAGAAATGTTTAAAGGAATTCCAATCATGCCTGGCAGAAATGAGATTGAGCAGCTTCATAAAATTTTCCGGCTATGTGGTACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACAACTTTTAGACCTCCAAAGTCTTATAGACCTAGCCTTGTAGAAACCTTAAAGAATCTCCCTCCATCTTCTTTAGGTCTTTTGTGCACTTTGCTCGCTTTGGATCCTGCATTCCGTGGCAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCATTACAAGCCCATTGGCATGTGACCTCTCTGGTCTGCCTGTTATCGTCAGCGAGGATGATGAATTTGTTCAAGCCAATGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATATGGAGCGTCGCAAGAATTCAACATCTAAGAGCCCATTAGAACATACTGTATCTTCTAAGGAGGAATTGACAAGGAATGCTAAACCTGAAACTTTTGTTCCAACTGAAGACATGGATAGCACAAGTAGTACCTCATCTAGTGTAAACCCAGGAGAGGCTAAGGATCAATCACCTTTTTTTCTATCTCCATTTGGAGCTTTAGATCAAAAGCTATCTCCAAAAACCCATCACCATGTTAATGGTGGTGAAAAAAACGTCAAGAACCTTCCTCCATTACCCAAGTCAAAACCAAACGCTAGCAAGAAAGATGAAAGCAAACACAGACCTGACCACTTTTTCAGGTCAGCTTCCACCATAGAATTTAGATACTTAAAAAGGGAGGAACGTTTACTCTTGGAAATTGATGATTAG 1803 0.4165 MGCVQAKPLDLEEGPEYRTLDRLKLDNGCVPSTDFVAHRRSTGQRHHEPNKEYERLHQRREQPRKQTNELIESGVANAEGLHHKGKVVGRQGRRVTRRDDKNLANQCCFEDDMVDGWPKWLVDNVPTQVLAGLVPRSAESYKMIDKVGQGTYSNVYKALDQETGEIVALKKVKFNTSEPESIKFMAREIMILQRLDHPNVLKLIGLATSRMQYSIYLVFDFMQTDLAVIARPEERLTEPQVKCYMHQFLSGLQHCHDRGILHRDIKGSNLLIDKNRMLKIADFGLANFYGPERHQPLTSRVVTLWYRAPELLLGDTEYGVGVDLWSAGCLLAEMFKGIPIMPGRNEIEQLHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETLKNLPPSSLGLLCTLLALDPAFRGSASKALKNQFFITSPLACDLSGLPVIVSEDDEFVQANEQIKYMNSKIRRSRTYMERRKNSTSKSPLEHTVSSKEELTRNAKPETFVPTEDMDSTSSTSSSVNPGEAKDQSPFFLSPFGALDQKLSPKTHHHVNGGEKNVKNLPPLPKSKPNASKKDESKHRPDHFFRSASTIEFRYLKREERLLLEIDD* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1363 600 MobiDBLite consensus disorder prediction 38 65 - -
Gso20g1363 600 MobiDBLite consensus disorder prediction 39 65 - -
Gso20g1363 600 MobiDBLite consensus disorder prediction 561 575 - -
Gso20g1363 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Gso20g1363 600 SUPERFAMILY Protein kinase-like (PK-like) 136 426 IPR011009 -
Gso20g1363 600 PANTHER CELL DIVISION PROTEIN KINASE 1 565 - -
Gso20g1363 600 MobiDBLite consensus disorder prediction 462 491 - -
Gso20g1363 600 Gene3D Phosphorylase Kinase; domain 1 133 223 - -
Gso20g1363 600 SMART serkin_6 141 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1363 600 ProSiteProfiles Protein kinase domain profile. 141 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1363 600 Gene3D Transferase(Phosphotransferase) domain 1 226 465 - -
Gso20g1363 600 PANTHER CYCLIN-DEPENDENT KINASE 1 565 - -
Gso20g1363 600 MobiDBLite consensus disorder prediction 499 517 - -
Gso20g1363 600 Pfam Protein kinase domain 141 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1363 600 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Gso20g1363 600 MobiDBLite consensus disorder prediction 462 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1363 Gso-Chr20 43765219 43773218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1363 136 483 Core Cell Cycle Gene Families AT5G10270 41.962 1.72e-88 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso20g1363 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1363 K08819 - gmx:100803293 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1363 20 43765219 43773218 Gso10g1989 10 46895616 46900736 GST