Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1360 ATGGAACACGCCTTCCTAGCCATCGTCGCCGCCACCGCCAGCTTCTTCGTGGTTATGCTCCTCCTTGCCGCCGCCATCCTCCTCTGCCAGCACCACCGCAACTCCACCAAAGCCCCAACCCGCAGCACCTCCCAGATCCGAACCCGCTCCGCCCCCCACCGTGACGCCTCCTCCCGCTCCGTCCTGGAAAACTGGTCCTCCGACCCCAACCTGATCAAGATCTCCTGGGAGGAGCTCGCCCGCGCCACCGACAACTTCTCCCCTCACCTCATCGTCGGCGATGGCAGCTTCGGCCTCGTCTACAAGGCCCGTCTCTCCAACGGCGCCACCGTCGCCGTCAAAAAACTCTCCCCCGACGCCTTCCAGGGCTTCCGCGAGTTCACCGCCGAGATGGAGACCCTAAGCCGCCTCCGCCACCCAAACATCGTCAAAATCCTCGGCTACTGGGCCTCAGGCCCGGAACGCCTCCTCGTCTACGAGTTCATCGAAAAGGGAAACCTCGACCAGTGGCTCCACGAACCCGATCTCTCTCGCTCCCCTCTCCCATGGCCCACACGCGTCCACATCATCCGCGGCGTGGCCCATGGGCTTTCCTACCTCCACGGCCTCGACAAGCCCGTCATCCACCGCGACATAAAGGCCAGCAACATCTTACTGGACTCTAACTTCCAGGCCCATATCGCTGACTTTGGGCTGGCCCGTAGGATCGACAACACTCGGACCCACGTGTCCACGCAGTTCGCGGGAACAATGGGCTACATGCCGCCGGAGTACATAGAAGGGTCCAATGTGGCCAACACGAAGGTGGATGTGTATAGTTTTGGGATTTTGATGATTGAGACCGCGTCGAGCCACAGGCCCAATTTGCCCATGAAATTGGGCACGGACGACATTGGGATGGTCCAGTGGGCCAGGAAGATGAAGGAGAATAATGCGGAGATGGAGATGGTGGATGTGAATATTGGGTTGAGGGGGGAGGAGGAGAGTGTTAAGGAGTACGTGCGCATCGCTTGTGAGTGCACCCGTGAGATGCAGAAGGAAAGGCCCGAAATGCCCCAAGTTGTTCAATGGTTGGACTCAATGTCACTTTCAACCAAACCTTTTCATCTCGTGTAA 1116 0.5914 MEHAFLAIVAATASFFVVMLLLAAAILLCQHHRNSTKAPTRSTSQIRTRSAPHRDASSRSVLENWSSDPNLIKISWEELARATDNFSPHLIVGDGSFGLVYKARLSNGATVAVKKLSPDAFQGFREFTAEMETLSRLRHPNIVKILGYWASGPERLLVYEFIEKGNLDQWLHEPDLSRSPLPWPTRVHIIRGVAHGLSYLHGLDKPVIHRDIKASNILLDSNFQAHIADFGLARRIDNTRTHVSTQFAGTMGYMPPEYIEGSNVANTKVDVYSFGILMIETASSHRPNLPMKLGTDDIGMVQWARKMKENNAEMEMVDVNIGLRGEEESVKEYVRIACECTREMQKERPEMPQVVQWLDSMSLSTKPFHLV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1360 371 SMART serkin_6 86 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1360 371 CDD STKc_IRAK 92 361 - -
Gso20g1360 371 Gene3D Phosphorylase Kinase; domain 1 45 161 - -
Gso20g1360 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gso20g1360 371 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 360 - -
Gso20g1360 371 PANTHER OS01G0253100 PROTEIN 1 360 IPR045271 GO:0004714|GO:0006468
Gso20g1360 371 ProSiteProfiles Protein kinase domain profile. 86 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1360 371 Pfam Protein kinase domain 91 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1360 371 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Gso20g1360 371 MobiDBLite consensus disorder prediction 37 59 - -
Gso20g1360 371 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
Gso20g1360 371 SUPERFAMILY Protein kinase-like (PK-like) 68 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1360 Gso-Chr20 43737741 43740041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1360 71 358 Receptor kinase-like Gene Family AT5G07280 44.521 3.68e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso20g1360 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1360 - - gmx:100305364 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1360 20 43737741 43740041 Gso10g1993 10 46923382 46924924 GST