Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso20g1356 | ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGATTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA | 840 | 0.5536 | MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSDSYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG* | 280 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso20g1356 | 279 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | SUPERFAMILY | DNA-binding domain | 64 | 122 | IPR016177 | GO:0003677 | |
Gso20g1356 | 279 | MobiDBLite | consensus disorder prediction | 225 | 240 | - | - | |
Gso20g1356 | 279 | MobiDBLite | consensus disorder prediction | 208 | 279 | - | - | |
Gso20g1356 | 279 | Gene3D | AP2/ERF domain | 63 | 123 | IPR036955 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | PRINTS | Ethylene responsive element binding protein signature | 87 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | Pfam | AP2 domain | 64 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | SMART | rav1_2 | 64 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 | 34 | 242 | - | - | |
Gso20g1356 | 279 | PANTHER | DNA-BINDING DOMAIN | 34 | 242 | IPR044808 | GO:0003700|GO:0009873 | |
Gso20g1356 | 279 | CDD | AP2 | 72 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Gso20g1356 | 279 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso20g1356 | Gso-Chr20 | 43696062 | 43698335 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso20g1356 | 55 | 124 | AP2-EREBP Transcription Factor Family | AT5G61890 | 78.571 | 1.17e-33 | 121 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Gso20g1356 | AP2 | 4.5e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso20g1356 | - | - | gmx:100802242 | 424.476 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso20g1356 | 20 | 43696062 | 43698335 | Gso10g1998 | 10 | 46960478 | 46962268 | GST | |
Gso16g1320 | 16 | 32598981 | 32601745 | Gso20g1356 | 20 | 43696062 | 43698335 | PCT | |
Gso2g0660 | 2 | 6812491 | 6814731 | Gso20g1356 | 20 | 43696062 | 43698335 | PCT | |
Gso20g1356 | 20 | 43696062 | 43698335 | Gso16g1320 | 16 | 32598981 | 32601745 | PCT | |
Gso20g1356 | 20 | 43696062 | 43698335 | Gso2g0660 | 2 | 6812491 | 6814731 | PCT |