Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1356 ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGATTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA 840 0.5536 MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSDSYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1356 279 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gso20g1356 279 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Gso20g1356 279 MobiDBLite consensus disorder prediction 225 240 - -
Gso20g1356 279 MobiDBLite consensus disorder prediction 208 279 - -
Gso20g1356 279 Gene3D AP2/ERF domain 63 123 IPR036955 GO:0003700|GO:0006355
Gso20g1356 279 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gso20g1356 279 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gso20g1356 279 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Gso20g1356 279 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gso20g1356 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 34 242 - -
Gso20g1356 279 PANTHER DNA-BINDING DOMAIN 34 242 IPR044808 GO:0003700|GO:0009873
Gso20g1356 279 CDD AP2 72 123 IPR001471 GO:0003700|GO:0006355
Gso20g1356 279 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1356 Gso-Chr20 43696062 43698335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1356 55 124 AP2-EREBP Transcription Factor Family AT5G61890 78.571 1.17e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1356 AP2 4.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1356 20 43696062 43698335 Gso10g1998 10 46960478 46962268 GST
Gso16g1320 16 32598981 32601745 Gso20g1356 20 43696062 43698335 PCT
Gso2g0660 2 6812491 6814731 Gso20g1356 20 43696062 43698335 PCT
Gso20g1356 20 43696062 43698335 Gso16g1320 16 32598981 32601745 PCT
Gso20g1356 20 43696062 43698335 Gso2g0660 2 6812491 6814731 PCT