Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1343 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGCTTTGGAAGCCTATCAAGGAGAAGTTTTGAGGTAAGGCTTCCTGGCCATAACAGGGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGATCAGCCACCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCTCCGGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCTTGAAGCAGCCTGGGCATAGGGATGGACCCATTCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAACCTCCCTACCACAATGCTATGCTGTCTCCACCTGGCCGCAGCCGTAGGTTTTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCATGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGGCCACGAAGGATGAATTGCACAATGTACTCAATTCCTGCATCATCCATGGAGCCTAATGGCATTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGTGCCCTTGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATTGACAATTCAACTGAGTTTAGCAGCTCTAGATTCTCCGACATCATGGGGATTGGCAATGAAGATGAGGAGGGAAAGGTAAGACCACTAGTTCTCAAGAACAAGTCTCCAAGGTGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCGACACCACCACCAGCCATTGTTACTACAGGAACAGGACCTACACCATCTCAGCCAACACAATCTTCTTCTGACCCTGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1293 0.4625 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHNRGKSRSSVHELQDQPPVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYHNAMLSPPGRSRRFSKKVSPKVPSGSYNIAHVTYELNVLGTRGPRRMNCTMYSIPASSMEPNGIVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSSRFSDIMGIGNEDEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPPAIVTTGTGPTPSQPTQSSSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1343 430 MobiDBLite consensus disorder prediction 372 387 - -
Gso20g1343 430 Gene3D - 48 101 - -
Gso20g1343 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Gso20g1343 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Gso20g1343 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Gso20g1343 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Gso20g1343 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Gso20g1343 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Gso20g1343 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Gso20g1343 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Gso20g1343 430 PANTHER TUBBY-RELATED 1 430 - -
Gso20g1343 430 Pfam Tub family 114 425 IPR000007 -
Gso20g1343 430 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Gso20g1343 430 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Gso20g1343 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Gso20g1343 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Gso20g1343 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Gso20g1343 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 430 - -
Gso20g1343 430 MobiDBLite consensus disorder prediction 368 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1343 Gso-Chr20 43561649 43565729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1343 1 430 TUB Transcription Factor Family AT1G76900 69.063 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso20g1343 Tub 1.5e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1343 K19600 - gmx:100817532 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1343 20 43561649 43565729 Gso10g2012 10 47085454 47089518 GST
Gso16g1339 16 32859999 32864886 Gso20g1343 20 43561649 43565729 PCT
Gso2g0671 2 6980575 6985381 Gso20g1343 20 43561649 43565729 PCT
Gso20g1343 20 43561649 43565729 Gso16g1339 16 32859999 32864886 PCT
Gso20g1343 20 43561649 43565729 Gso2g0671 2 6980575 6985381 PCT