Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1342 ATGGAGCTAATTGGAGACACTACCACAGTCATGGAAACGTCGTCCGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAAATTCCGGTGAAGAAGAGAATAATAATAAGGGAAAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGGTGACAATAAGATCAACAGTAACAACAACTCATTATGCGGTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCCGATATGGATGCTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTCTGGGAAGAAGTTGCAAGGAAACTATCAGAACTGGGTTACCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAATGTATACAAGTACCACAAAAGAACCAAAGAGAGCAGAAGTGGGAAACACGAGGGAAAAACCTACAAGTTTTTTGATCAATTACAAGCCCTCGAGAACCAATTCACAGTCTCTTACTCTCCAAAACCACAACCCACTTTGGCAACAACAACAAACATAATAACATTACCACCCCCAACAAGGCCTAGTGACACAACAGCAATCTCTTATGTCACCACCACTGTTCCATCCACAAACCCTACAATCATATCTCCTTCACCACAACCACCAACCCATGCCACCACCACAACTACCATCACTTCTCCAACAGTAGCAACCAACCCTAAAAACCCTCCACAATCCAACAACAACAGCAACATCCCCAATTACTCTTTGCTCAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCGTCCACGGCCTCGGATGAGGACTTGGAAGAGAAGTACCGTAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACGAGGCAAGTCTTGGCCAAGCAAGAGGAAATGCAGAAGAGGTTCCTCGAAGCCATTGACAATAGGGAGAGAGAACAAGTGGCGCAACAAGAGGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCAAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAACACCAAAATTCCACCACAACAAAAGCTGGTGCCAATTTCCTTCAACAACCACTTCCACAACAAGTACAACCACCACGACAACAAGCTCCACAACCACTGATGATGTCAAATAATAACAACATTGAAATTCAGAAAATGAATAATGGTCACAGTGTTGTTGCTGCTGCTACTCCTACTACTGTCGTTGCTGCTACTGCTATTGCTACTACAGCTGTTACTACTACTCCTTCTTCATTGAGCTCTTTATCTTCTTCTAGGTGGCCAAAGACAGAAGTTCATGCTTTGATAAGATTGAGGACGAGTCTTGAAGCAAAGTACCAAGAAAATGGGCCAAAGGCTCCATTCTGGGAGGATATATCAGCAGGAATGCTGAGACTAGGGTACAACAGAAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAGAGCAACAAGCAAAGGCGCGAGGATAGTAAGACATGTCCTTATTTTCATGAACTTGAAGCTCTATACAAAGAAAAGAGCAAGACTACTCAGAACCCCTTTGGCGCTTCGTTCCACAACATGAAGCCACATGAGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCTACTCAATATGAACAAGGTGCAGCCAAGGAGAACAATAATAGTGAAAGAAAAGAAAGAGAGGAGGAGGAAGAAGAAGAAGATGATGATGAAAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1899 0.4429 MELIGDTTTVMETSSGEAVAAHDGGEVIMMDANSGEEENNNKGKEGEEEEEEEGDNKINSNNNSLCGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKESRSGKHEGKTYKFFDQLQALENQFTVSYSPKPQPTLATTTNIITLPPPTRPSDTTAISYVTTTVPSTNPTIISPSPQPPTHATTTTTITSPTVATNPKNPPQSNNNSNIPNYSLLNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDNREREQVAQQEAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQHQNSTTTKAGANFLQQPLPQQVQPPRQQAPQPLMMSNNNNIEIQKMNNGHSVVAAATPTTVVAATAIATTAVTTTPSSLSSLSSSRWPKTEVHALIRLRTSLEAKYQENGPKAPFWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSKTTQNPFGASFHNMKPHEMMEPLMVQPEQQWRPPTQYEQGAAKENNNSERKEREEEEEEEDDDENEEGDLESVEDEGGNRYEIATNKLSSVDTVE* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1342 632 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 4 622 - -
Gso20g1342 632 MobiDBLite consensus disorder prediction 202 248 - -
Gso20g1342 632 MobiDBLite consensus disorder prediction 590 610 - -
Gso20g1342 632 MobiDBLite consensus disorder prediction 567 632 - -
Gso20g1342 632 MobiDBLite consensus disorder prediction 1 69 - -
Gso20g1342 632 CDD GT1 69 134 - -
Gso20g1342 632 PANTHER - 4 622 - -
Gso20g1342 632 Pfam Myb/SANT-like DNA-binding domain 69 155 IPR044822 -
Gso20g1342 632 Pfam Myb/SANT-like DNA-binding domain 445 532 IPR044822 -
Gso20g1342 632 ProSiteProfiles Myb-like domain profile. 439 503 IPR001005 -
Gso20g1342 632 Coils Coil 575 613 - -
Gso20g1342 632 CDD GT1 446 510 - -
Gso20g1342 632 MobiDBLite consensus disorder prediction 212 248 - -
Gso20g1342 632 Gene3D - 71 132 - -
Gso20g1342 632 Gene3D - 447 508 - -
Gso20g1342 632 SMART sant 67 129 IPR001005 -
Gso20g1342 632 SMART sant 443 505 IPR001005 -
Gso20g1342 632 ProSiteProfiles Myb-like domain profile. 69 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1342 Gso-Chr20 43540974 43544457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1342 67 567 Trihelix Transcription Factor Family AT1G76890 49.133 1.09e-144 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso20g1342 Myb_DNA-bind_4 8.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1342 - - gmx:100799041 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1342 20 43540974 43544457 Gso10g2013 10 47106177 47109721 GST
Gso16g1343 16 32920226 32923238 Gso20g1342 20 43540974 43544457 PCT
Gso2g0673 2 7013579 7016575 Gso20g1342 20 43540974 43544457 PCT
Gso20g1342 20 43540974 43544457 Gso16g1343 16 32920226 32923238 PCT
Gso20g1342 20 43540974 43544457 Gso2g0673 2 7013579 7016575 PCT