Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1341 ATGCTCGGGGACTCAGCTCTGTTGGGAGGAGGAGGAGGAGGAGAAGGTGGTGCCTCCGCCGATGTAGTGGCGGCGACCGCCACGCATGATGCGACAACGACGACGACGACCGGAGGAGGCGGTGGCGGATCAAATAATTCGGGGGACGATGAGAGGGGTAGAATCGAAGAAGGTGAACGTAGCTTCGGCGGTAACCGGTGGCCGCGACAAGAGACTTTGGCTTTGTTAAGGATACGCTCCGACATGGACGTGGCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAGAACCACTCTCCAACACCCCATTCCCCCAACCCTTCATCAAAACCACTACAATCAGCACCATCAAGAGTAGTAGCAACAACAACTGCATCATCAATGTCACTACCAATTCCAACACCAACAACAACAGTGCCAATGCAGCCAATATTGTCCAACACTATACCCACAAGTAGTGTCCCCAATATCACTGTTCCATCAACAACAATACTCCCTATAACCATACCTCAACCCATTCTCACCACCCCATCAATAAACCTCACAATCCCTTCTTACCCTCCATCAAACCCTACCAATTTCCCACCGCCATCAAACCCTACCCCACCACTCTCTTTCCCCACCGACACCTTCTCCAATTCCACCTCCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAAGGAGACGCAAGAGGAAGCGCAAATGGAAGGATTTCTTCGAGAGACTGATGAAGGAAGTGATCGAGAAGCAAGAGGAGCTACAAAAGAAGTTCTTGGAAGCAATAGAGAAACGCGAACACGACAGAATAGCAAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATCTTAGCACAAGAAAGGTCCATAGCCGCAGCCAAAGACGCAGCCGTTATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGTCAAGCGTTGACCAACATCAACCTCGTACAACCACAACCACAACTACAACCACAACCACCGGTACAACAACAAGTGACACCACCTAATATAGTACCAGCTCCTATGCAACAACCACTGCCTGTGATTGTTACACAGCCTGTGGTGTTGCCAGTGGTATCACAAGTGACCAATATGGAGATAATGAAAGCCGATAATAATAACAACAATAACAATAATAACAACTGCGAAAATTTCTTGCCACCGAGTTCTTCTCGGTGGCCGAAAGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAGCATGGATGAGAAGTATCAAGAGAATGGACCAAAGGGTCCCCTCTGGGAGGAGATCTCAGCCTCAATGAAGAAGCTGGGGTACAACCGAAACGCGAAAAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCCAAGACGTGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGGCAGAAGCACAAAGCCGAAGAGAGCACCGCGGCGGCGAAGGCGGAGAGCGCGGTGGCACCGTTGATGGTGCAGCCGGAGCAGCAATGGCCACCTCAGCAGCAGGATGATAGGGACATCACAATGGAAGACATGGAGAACGAAGATGATGAATATGAGGAAGAGAGGGAAGGAGAGGAAGAAGAAGAAGAGGATGAAGAGGATGAAGAAGGTGGTGGTGGGAACTATGAGATAGTGGCAAACAAAACAAGTGGCGGTGGTGGTGCTGCTGCTTCAGTGGGGGCTTCAACGGAGTAG 1938 0.4902 MLGDSALLGGGGGGEGGASADVVAATATHDATTTTTTGGGGGGSNNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHSPTPHSPNPSSKPLQSAPSRVVATTTASSMSLPIPTPTTTVPMQPILSNTIPTSSVPNITVPSTTILPITIPQPILTTPSINLTIPSYPPSNPTNFPPPSNPTPPLSFPTDTFSNSTSSSSTSSDETLERRRKRKRKWKDFFERLMKEVIEKQEELQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALTNINLVQPQPQLQPQPPVQQQVTPPNIVPAPMQQPLPVIVTQPVVLPVVSQVTNMEIMKADNNNNNNNNNNCENFLPPSSSRWPKVEVQALIKLRTSMDEKYQENGPKGPLWEEISASMKKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRQKHKAEESTAAAKAESAVAPLMVQPEQQWPPQQQDDRDITMEDMENEDDEYEEEREGEEEEEEDEEDEEGGGGNYEIVANKTSGGGGAAASVGASTE* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1341 645 PANTHER - 24 629 - -
Gso20g1341 645 SMART sant 457 519 IPR001005 -
Gso20g1341 645 SMART sant 63 125 IPR001005 -
Gso20g1341 645 Gene3D - 461 522 - -
Gso20g1341 645 Gene3D - 67 128 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 26 44 - -
Gso20g1341 645 CDD GT1 459 524 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 166 191 - -
Gso20g1341 645 CDD GT1 65 130 - -
Gso20g1341 645 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Gso20g1341 645 MobiDBLite consensus disorder prediction 49 64 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 240 287 - -
Gso20g1341 645 Coils Coil 293 320 - -
Gso20g1341 645 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 24 629 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 152 191 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 261 278 - -
Gso20g1341 645 Coils Coil 589 616 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 244 260 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 588 620 - -
Gso20g1341 645 ProSiteProfiles Myb-like domain profile. 459 517 IPR001005 -
Gso20g1341 645 Pfam Myb/SANT-like DNA-binding domain 459 546 IPR044822 -
Gso20g1341 645 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Gso20g1341 645 Coils Coil 543 563 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 570 645 - -
Gso20g1341 645 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1341 Gso-Chr20 43513840 43517239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1341 56 577 Trihelix Transcription Factor Family AT1G76880 49.907 5.12e-154 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso20g1341 Myb_DNA-bind_4 1.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1341 - - gsj:114402550 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1341 20 43513840 43517239 Gso10g2014 10 47123702 47127225 GST
Gso16g1344 16 32944201 32948003 Gso20g1341 20 43513840 43517239 PCT
Gso2g0674 2 7029067 7033855 Gso20g1341 20 43513840 43517239 PCT
Gso20g1341 20 43513840 43517239 Gso16g1344 16 32944201 32948003 PCT
Gso20g1341 20 43513840 43517239 Gso2g0674 2 7029067 7033855 PCT