Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1340 ATGGAAGGTAATTTGCCACAGGGAGGTATAATTCAAGGTGGAACTTCTTTTGGTGGCTTTGATTTGCCGATTCGGGTTCAGCATCAAGCACAGCATCCCCATACAATGCACCAACATCAAACTCATCCGCGTCAAGGGTCTTCTGTACATTCCACCGTTCATGATGGGTTTCCACTTACAATGGGAACCATGCAGAACTGTGACCAAACCATTTCATTGACTGACTTTAGTAAAGGAGACAGAAGCAAAAACTCAGCGAGTGAGGAAGATGAGCCGAGCTATACTGAGGATGGTGTTGATTGTCACCATGAAACAACTAGAGGGAAGAAAGGATCACCTTGGCAGCGTGTGAAGTGGACTGATAAGATGGTAAGGCTTCTGATAACAGCTGTTTCTTATATAGGCGAGGATGTAACTGCTGATGGTGGTAGCAGCGGAAGAAGAAAGTTTGCAGTCTTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGGTTATCATGTTTCGCCTCAGCAATGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAAAAGCTTAATGATATGCTAGGGAGGGGTACTTCTTGTCAGGTTGTTGAAAATCCTGCACTGTTGGATGTAATAGATTTTCTTTCCGAGAAAGAAAAAGACGACGTCCGGAAAATATTGAGCTCAAAACACTTGTTCTATGAAGAGATGTGTTCTTATCATAATGGTAACAGGTTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTGCAGTTAGCTCTCCGAAATAGAGACGATCATGATGATGATATCAGAAGGTCCCATCATGATGATCATGATGAAGATGATCAAGATGCGGAAATTGATGATCATGATGACTTTGAAGAGAATTGTGCTTCTCATGGTGATAGTAGAGGAATATATGGGCCATCAGGCGGATCTATGAAGAAATTGAAACAATGCCAAGGCCAAGAAGATGCTAATACTTTTGGTAAGTCTTTAAATTGTCAGGAATACAACAAAAGTTCATATCCCCATGGACAGATGATCCAATCTGATGTGAATCAAGGTTTACCTGAAGGCATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCACACCCTTCAGTTAGAAGAACAAAAGCTACAAATTCAGGTCGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGGGAGTTGGAGAAGCTGAGCCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGTATTGCTTTAGAACTGAAGCGAAAGGAAATGGGCACTGGCTTTAAATAG 1338 0.4155 MEGNLPQGGIIQGGTSFGGFDLPIRVQHQAQHPHTMHQHQTHPRQGSSVHSTVHDGFPLTMGTMQNCDQTISLTDFSKGDRSKNSASEEDEPSYTEDGVDCHHETTRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTADGGSSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDDDIRRSHHDDHDEDDQDAEIDDHDDFEENCASHGDSRGIYGPSGGSMKKLKQCQGQEDANTFGKSLNCQEYNKSSYPHGQMIQSDVNQGLPEGMRAAWLQKQWVESHTLQLEEQKLQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERMKLENERIALELKRKEMGTGFK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1340 445 MobiDBLite consensus disorder prediction 1 56 - -
Gso20g1340 445 Gene3D - 119 191 - -
Gso20g1340 445 PANTHER F16F4.11 PROTEIN-RELATED 1 444 - -
Gso20g1340 445 PANTHER FACTOR, PUTATIVE-RELATED 1 444 - -
Gso20g1340 445 MobiDBLite consensus disorder prediction 74 112 - -
Gso20g1340 445 MobiDBLite consensus disorder prediction 31 56 - -
Gso20g1340 445 Pfam Myb/SANT-like DNA-binding domain 116 242 IPR044822 -
Gso20g1340 445 Coils Coil 377 399 - -
Gso20g1340 445 MobiDBLite consensus disorder prediction 81 112 - -
Gso20g1340 445 MobiDBLite consensus disorder prediction 297 320 - -
Gso20g1340 445 Coils Coil 407 439 - -
Gso20g1340 445 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1340 Gso-Chr20 43492659 43494954 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso20g1340 Myb_DNA-bind_4 4.7e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1340 - - gmx:100816474 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1340 20 43492659 43494954 Gso10g2015 10 47147373 47149626 GST
Gso16g1345 16 32976316 32978507 Gso20g1340 20 43492659 43494954 PCT
Gso20g1340 20 43492659 43494954 Gso16g1345 16 32976316 32978507 PCT