Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1336 ATGGGGAAGAAGAAACCGACGGCGAGGGACGAAGAGAACGCGGTACAGCAAGGCGGCGGCGGTAAATCGAAGAAGAAGGCAGTGTTAATCGACGACGACGAGTATTCCATCGGAACGGAGCTCTCCGAGGAGCCGGCGCCGGCTTCCGAGGAGAAACCCGTCGTGGCGGGAAAGAAGAAAGGTAAGAAAGGTAATGCTAAAGCCAAGAGTAATGATGATGATGTTGATGAGGATGAAGATGATCCTGAAATTGTGTTTGCTGGGAAGAAGAAGGGGAAGAATAAGAAAGGTGGTGGGAGCAGTGCGTTCACTGCTTCTGGCTTTGATTTGCTCGGTGATGAGAGGGATGATGATGAAGAGAAATCCGGGTTAACCGGTGAGGTTGATGGTGAGGAAGAGGATGAACCTGTGGTTAGTTTTACGGGGAAGAAGAAGGCATCGAAGAAAGAAGGTGGTAGTTTGTTCAGTGCATCTGCTTTTGATGCTATTGATGATGGTGAGGAGGAGGATGGGCCAGTGATTAGTTTTAAAGGCAAGAAGAAGTCCTCTAAGGGTTCGAAGAAAGGCGGTGGCAGTTTGTTCTCTGCCTCGGCTTTTGATGCTATTGATGACGATGCGGATGGTGAGGTGGTGGATGATAAGAATGACGATGTTGATGATGATGAGCCTGTTATTGCTTTCACTGGGAAGAAGAAGTCTTCCAAAGGAGGTAAGAAGGGTGGTTCAGTGTTTTCAGCTGCTGTTCTTGGTGAGATTGATGATGGAGAGGAGAATAAGGATGATGGTGGTGGTGATGATGATGATGACGATATTGAACCGATCACTTTCTCTGGTAAGAAAAAGAAGTCTTCCCAAAAGGCTGCTAATTCTGTTAGCAAAGGTGCTTCTGTTGAGGAAGGTGATGACAAAGATGAGGATGATGTTTCGTTAGTTGCATTTTCAGGTAAAAAGAAGTCTTCTAAAAAGAAGGGCAGTAGTACTGCTGCCAAAGGGAGTGATGAAAATATGGATGCAGTGGATCCTGAGGCACCCAGTGTTGGTAGTACTGATGCTGGCAACAGCAATGTAAATAAGAGTGAAGAGGTCGCTGGAAATTCCAAAAATAAAAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGACAAACTTCTTGCAGAGCTTGGTGAGACCCCTCCTGTACCAAAACCCTCAACTCCACCCCAGGATGATAAAGTTCAGCCTACTCCTGAAGTTGTACTGGTTGCTGATGCTTCGGGGGAAAAGGAGGGTGAAGAGGAGACTGTAGAGACAGCTGCTGCAAAGAAGAAGAAGAAGAAAAAGGAAAAGGAGAAGGAGAAGAAGGCAGCTGCGGCGGCAGCAGCAGCAGCAGTAGCAGGAACTGTACCAGAAAATGAAACAGCAGAAGATAAAGCTGAGGTAATTGAACCAAAGAAGAATGATTCAAAGGCTAAAAAAGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTAGCTCGAAGACAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAAAGGTTAAGGAAGGAGGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAAGCAGAAGAGGCTAGACGTAGAAAGAAGGAAAGAGAAAAGGAAAAACTCCAGAAAAAAAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAGGAAGAAGCCCGTCGTCTAGAGGCAATGAGGAAGCAGATTCTCAATAACACAGGGGGCATGACTCTCCCTGGTGGGGACTCTGGTGCTCCAGCCAAAAAACCCATATATCAAACGAAGAAGGTAAAACCAAATAACCGTAATCAGAATGGTGCTGCTGCTGCTCAGATTGCTGAAAGTGTTGAAGCAAAGGAGACTGCCACTGATGTAGCTTCAGAGGAACCAGAAAAGATTGAAGAAGTGGAGTCAGTCCAGGTGGATGACAAAGTTGAACTTCCTGTAGCTGTTGAAGAGGATGGTGAGGAAGATGATGACGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTCAATACGAAAGGTGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTAAACCTATCGTCAAGAAGGAGATAAAAAATGCTGTACCTGCTCAGAATGCTGGTGCTACTAAGCCTGTGGCTGAAGAAATTGAAAATGGAAAGCAGATTAATCCTCACTTGAATAGGGAACCAAGAAAGTCTGTTGTGCCTCCTAAACCTAGTGATGAGAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCATGTGGATACTGGCAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGTGGCATCACACAACAGATTGGTGCTACATACTTCCCGGCTGAGAACATACGTGAAAGAACGAAGGAACTGAAAGCTGATGCAAAGCTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGGCACGAGTCATTTACTAACCTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCCCTAAATCTATTAAAAATGAGGAATACGGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGGAATGCTCCAATTGTTAAAGCATTGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCACTCAGATTATTACTGAATTCAAAGTACAAGGGCTGAATACCGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACGTTCAGCATTGTGCCTACAAGTGCAATAAGCGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGCACTGTTTTAGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGTCCTATAGTTACCACAATTCGAGCTTTATTGACACCTCATCCGATGAAGGAACTTCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCTCAGGGCCTTGAACATGCCATCGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAATCAGCCATGGAAGATATGCGGTCAGTAATGAGCAGGATTGACAGGACTGGGGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAGTATCCCAGTTAGTGGTATAAGCATAGGCCCTGTACATAAGAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAAAAACGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTTACTCCTGAGGCCAGGGAACTGGCAGATGAATTGGGTGTCAAGATATTTATTGCTGATATCATTTATCATCTGTTTGACCAATTTAAAGCTTATATTGACAACATTAAGGAGGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTATGAGTATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGGACTCCAATTTGCATTCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAGCAACAAAAAATGTTCGGGAGGCACTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATCGATATACTCAAAGCTAATTATCGGGATGAACTAAATATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4062 0.4348 MGKKKPTARDEENAVQQGGGGKSKKKAVLIDDDEYSIGTELSEEPAPASEEKPVVAGKKKGKKGNAKAKSNDDDVDEDEDDPEIVFAGKKKGKNKKGGGSSAFTASGFDLLGDERDDDEEKSGLTGEVDGEEEDEPVVSFTGKKKASKKEGGSLFSASAFDAIDDGEEEDGPVISFKGKKKSSKGSKKGGGSLFSASAFDAIDDDADGEVVDDKNDDVDDDEPVIAFTGKKKSSKGGKKGGSVFSAAVLGEIDDGEENKDDGGGDDDDDDIEPITFSGKKKKSSQKAANSVSKGASVEEGDDKDEDDVSLVAFSGKKKSSKKKGSSTAAKGSDENMDAVDPEAPSVGSTDAGNSNVNKSEEVAGNSKNKKKNKKKSGRTAQEEEDLDKLLAELGETPPVPKPSTPPQDDKVQPTPEVVLVADASGEKEGEEETVETAAAKKKKKKKEKEKEKKAAAAAAAAAVAGTVPENETAEDKAEVIEPKKNDSKAKKAADKKVPKHVREMQEALARRQEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRKQILNNTGGMTLPGGDSGAPAKKPIYQTKKVKPNNRNQNGAAAAQIAESVEAKETATDVASEEPEKIEEVESVQVDDKVELPVAVEEDGEEDDDEDEWDAKSWDDVNLNTKGAFADEEADSEPKPIVKKEIKNAVPAQNAGATKPVAEEIENGKQINPHLNREPRKSVVPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKALKQQTKDVQNEFNMRLTQIITEFKVQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLIQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVMSILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDELNMEEWRLVVKLKNLFKIQ* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1336 1353 TIGRFAM small_GTP: small GTP-binding protein domain 766 891 IPR005225 GO:0005525
Gso20g1336 1353 MobiDBLite consensus disorder prediction 719 757 - -
Gso20g1336 1353 SUPERFAMILY Translation proteins 1220 1352 IPR009000 -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 666 684 - -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 423 442 - -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 738 755 - -
Gso20g1336 1353 PRINTS GTP-binding elongation factor signature 765 778 IPR000795 GO:0003924|GO:0005525
Gso20g1336 1353 PRINTS GTP-binding elongation factor signature 829 839 IPR000795 GO:0003924|GO:0005525
Gso20g1336 1353 PRINTS GTP-binding elongation factor signature 845 856 IPR000795 GO:0003924|GO:0005525
Gso20g1336 1353 PRINTS GTP-binding elongation factor signature 881 890 IPR000795 GO:0003924|GO:0005525
Gso20g1336 1353 MobiDBLite consensus disorder prediction 136 150 - -
Gso20g1336 1353 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 761 977 IPR000795 GO:0003924|GO:0005525
Gso20g1336 1353 Pfam Elongation factor Tu GTP binding domain 765 973 IPR000795 GO:0003924|GO:0005525
Gso20g1336 1353 MobiDBLite consensus disorder prediction 254 272 - -
Gso20g1336 1353 CDD IF2_eIF5B 764 974 - -
Gso20g1336 1353 Gene3D - 1105 1209 IPR036925 -
Gso20g1336 1353 Coils Coil 497 568 - -
Gso20g1336 1353 CDD aeIF5B_II 985 1095 - -
Gso20g1336 1353 Coils Coil 427 459 - -
Gso20g1336 1353 CDD IF2_aeIF5B_IV 1224 1319 - -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 376 391 - -
Gso20g1336 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 1052 IPR027417 -
Gso20g1336 1353 Pfam Translation-initiation factor 2 1089 1202 IPR023115 -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 347 362 - -
Gso20g1336 1353 Gene3D - 755 983 IPR027417 -
Gso20g1336 1353 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1353 IPR015760 -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 471 582 - -
Gso20g1336 1353 Gene3D Translation factors 1216 1353 - -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 638 665 - -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 613 627 - -
Gso20g1336 1353 MobiDBLite consensus disorder prediction 202 220 - -
Gso20g1336 1353 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1353 - -
Gso20g1336 1353 Pfam Elongation factor Tu domain 2 1000 1075 IPR004161 GO:0005525
Gso20g1336 1353 MobiDBLite consensus disorder prediction 1 684 - -
Gso20g1336 1353 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1086 1215 IPR036925 -
Gso20g1336 1353 Gene3D Translation factors 984 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1336 Gso-Chr20 43454785 43464772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1336 220 1353 Eukaryotic Initiation Factors Gene Family AT1G76810 66.047 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1336 K03243 - gmx:100814875 2084.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1336 20 43454785 43464772 Gso10g2019 10 47175207 47185226 GST