Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1333 ATGGATTTGGTGGAAGGCGTTGGAGAGAGTTCCTCGCCGCCGCGCGCCTTCAGCGGCTGCAGCAACTACGACGTCCATAACAACGTCTACAACCGCCTCGTTGAAACCGGCCACGACCAAGCCGTTTCCAACCCCAACTTCCGCGAACACTTGGAGGCTCACTTCAATCGCTTGCCACCGAGTTATGGACTGGATGTGAATATCGATAGAGCTGAAGATGTTCTGTTGCATCAAACCCTTCTTGCTTTGGCTAAGGACCCTCACAAGCGCCCTGTATACCATATACGCTTCCTCGAGAATATTTCAACTAGAACAGATGGTGAAGATGAACAAATTTTAAGTACTCATTATAGCCCTGGATCAACTTCTCATGCAACAAATGGGGGAGCTGTATCACCTGGTAAAAGTAAGATGAGGGATATTGCAAATGAGTTTGAGCCTTGCTCGAAGCTCGAGGACCTAAATTTGGATGTCAGAAAGAACTCAAAGGTGACAGAGGAAAAATTTCTCACTGACAATTTTTTCCAGAGGCACGAACATTCAAGTGTCCCTGTTCATGAAATAATATTTTCCACTGTTGACAAGCCAAAGCTCTTAAGCCAGCTGTCCGCTTTGCTGTCTGATATTGGACTTAACATACGTGAAGCTCATGTTTTCTCCACAACTGATGGCTATTCCCTTGACGTGTTTGTGGTAGATGGATGGCCAGTAGAGGAAACAGATGATTTGTATGATGCTATGGAAAAAGCTGTAGCAAGAAGCGAGGGGTCATGGTCTCGTTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAACTGAAGGAAAATCAGGAGATTGGGAAATAGATAGGAGGTTGCTAAAGTTAGGAGAAAAAATAGCATCTGGATCCTCTGGAGATTTGTATCGTGGAGTTTATCTTGGTGAAGATGTTGCTGTTAAGGTTCTGAGATCAGAGCAATTGAATGATGCTTTAGAGGATGAGTTTGCTCAAGAAGTGGCCATTCTGAGGCAGGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTGTCCACATTTGTGCATAATAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACATGCATAGAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAATTTTGCAATTGATGTCTGCAAGGGTATGAAGTATTTGCATCAAAACAACATAATTCACAGAGATCTGAAGACGGCTAATTTGCTGATGGATACGCACAATGTTGTTAAAGTCGCAGATTTTGGAGTTGCTCGATTCCTAAATCAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCACCAGAGGTTATAAACCATCAGCCTTATGATCAGAAAGCAGATGTATTCAGTTTTTCCATTGTACTGTGGGAATTAGTGACGGCAAAGGTACCATATGACACCATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTGCGTCCAGAACTTCCGAAGGATGGGCACCCTAAACTATTAGAGTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCCACCGTCCATCCTTTAATGAGATAACCATTGAACTTGAAAATCTTTTGCAAGAAATGGAGAAAGATTCAGAAGCGAATGGTGCTTGA 1659 0.4334 MDLVEGVGESSSPPRAFSGCSNYDVHNNVYNRLVETGHDQAVSNPNFREHLEAHFNRLPPSYGLDVNIDRAEDVLLHQTLLALAKDPHKRPVYHIRFLENISTRTDGEDEQILSTHYSPGSTSHATNGGAVSPGKSKMRDIANEFEPCSKLEDLNLDVRKNSKVTEEKFLTDNFFQRHEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDDLYDAMEKAVARSEGSWSRSSNSHSAVEKALATEGKSGDWEIDRRLLKLGEKIASGSSGDLYRGVYLGEDVAVKVLRSEQLNDALEDEFAQEVAILRQVHHKNVVRFIGACTKCPHLCIITEYMPGGSLYDYMHRNHNVLELSQLLNFAIDVCKGMKYLHQNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKDGHPKLLELMQRCWEAIPSHRPSFNEITIELENLLQEMEKDSEANGA* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1333 552 Pfam Protein tyrosine and serine/threonine kinase 288 535 IPR001245 GO:0004672|GO:0006468
Gso20g1333 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gso20g1333 552 MobiDBLite consensus disorder prediction 116 130 - -
Gso20g1333 552 MobiDBLite consensus disorder prediction 116 135 - -
Gso20g1333 552 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 546 - -
Gso20g1333 552 CDD STKc_MAP3K-like 294 536 - -
Gso20g1333 552 PRINTS Tyrosine kinase catalytic domain signature 362 375 IPR001245 GO:0004672|GO:0006468
Gso20g1333 552 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672|GO:0006468
Gso20g1333 552 PRINTS Tyrosine kinase catalytic domain signature 445 455 IPR001245 GO:0004672|GO:0006468
Gso20g1333 552 PRINTS Tyrosine kinase catalytic domain signature 464 486 IPR001245 GO:0004672|GO:0006468
Gso20g1333 552 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672|GO:0006468
Gso20g1333 552 Gene3D Transferase(Phosphotransferase) domain 1 366 551 - -
Gso20g1333 552 SUPERFAMILY Protein kinase-like (PK-like) 275 541 IPR011009 -
Gso20g1333 552 Gene3D Phosphorylase Kinase; domain 1 277 365 - -
Gso20g1333 552 Coils Coil 529 549 - -
Gso20g1333 552 ProSiteProfiles Protein kinase domain profile. 288 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1333 552 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 546 - -
Gso20g1333 552 SUPERFAMILY ACT-like 186 255 IPR045865 -
Gso20g1333 552 SMART serkin_6 288 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1333 552 ProSiteProfiles ACT domain profile. 187 261 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1333 Gso-Chr20 43412609 43422390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1333 24 543 MAP Kinase Kinase Kinase AT2G17700 49.625 1.15e-176 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso20g1333 PK_Tyr_Ser-Thr 4.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1333 - - gmx:100797987 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1333 20 43412609 43422390 Gso10g2023 10 47220533 47230777 GST