Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1326 ATGGCGGGTTTTTGGAGCGTGTTTTGTGGGGAATCTGGTTGCTCAGAGGCTGGAAAAATGCCTGGCAGCTATGATTTTAGGCTTCTCATTGATCCTTCCACTTGTGTCAACCATTTGCTAATCTCTTGCTTTGATGTGTTGCTGCTTATCATGCTTGTATTCATTATGATCCAGAAGTCAACATTAAAACCATCTCGGGGTCTAATACAGGTGCAAAGATATCCATATTTCCAGCTAGTTTCTGCCATAGTCAATGGTGCTCTTGGGTTGGCACATTTGTGCTTTGGAATTTGGGTTTTAGAAGAGACGTTGAGGAAAAACCAAACTGTGTTGCCTCTTAATTGGTGGTTGCTAGAAATCTTTCATGGATTAACATGGTTGTTAGTGAGTTTAACAATAAGTCTCAAGTTGAAACAACTTCCAAGAGCATGGTCAGGGTTTTTTTCTGTTCTAATCTTCTTGGTTTCTGGTATTTTCTGCGGTTTATCCTTGTTTTATGCAATTAGTAGCAGAGAACTATCCCTTAAGATAGCTTCAGATATTCTATCTTTTCTGGGGGCGATATTATTGTTATTATGCACATATAAGGAATCCAACCATAGGGACACTGACAGTGAAATTGATGAAAGTCTTTATGCACCCTTAAACAGCGAGTCCAACAAAAATGATTATATTACATATGTAACCCCATTTGCCAAAACTGGATTCTTTGGCAGAATGACATTTTGGTGGTTGAATCCATTGATGAAAATGGGCAAAGAGAAAACACTTCAGGATGAAGACATTCCGCGTTTGCGGGAGGAGGATCGAGCAGAAAGTTGCTATCTGCTGTTTTTGGATCAATTGAACAGACAGAAACAGAAGGATCAATCCTCGCAGCCATCAGTTTTGAGGACAATAATTTTATGCCATTGGAAAGAAATTTTAATATCAGGATTCTTTGCATTGCTTAAGGTAGTTGCTCTGTCTTCAGGACCTCTTCTTTTGAATTCTTTTATATTGGTTGCTGAGGGTAACGAGAGTTTCAAATATGAGGGTTTTGTGTTGGCCATATCACTTTTCTTTACAAAAAACATAGAATCCTTATCACAAAGGCAATGGTACTTCCGCTGCAGACTCATTGGTGTGAAAGTTAGGTCGTTGCTAACTGCAGCCATTTATAGAAAACAATTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACAAGCTTACAGCTATGTATCTCATTAGTTATACTTTTTCGTGCTGTTGGATGGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACTGTGCTTTGCAATACTCCACTTGCGAAGTTGCAGCACAAGTTTCAAAGCAAGCTTATGGTGACACAAGATGAGAGATTGAAGGCTTGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGCTGTATGCGTGGGAAACCAATTTTAGAAGTTCTATAGAGCGATTAAGGAATGAGGAGCTCAAATGGTTGTCTGCAGTGCAATTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCCTCCCCTGTCTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCATTGCATGCAAATAATGTTTTTACTTTTGTCGCTACTTTGCGCCTTGTTCAGGATCCAATTAGAACCATCCCTGATGTTATTGGGGTGGTCATCCAGGCAAAAGTTGCGTTTGCTAGGATTGTAAAATTTCTTGAGGCACCTGAACTGCAGAGTGCAAATGTCACACAAAGGTGTATCAATGAGAATAAGAGGGGTTCAATTTTAATTAAGTCTGCTGACTTTTCATGGGAAGCTAATGTATCAAAGCCAACACTGAGAAACATAAACTTGAAGGTTAGACCACGACAAAAGGTGGCTGTCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCAGGGGACAATTGAGGTTCATGGGAAGTTTTCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAGAATATATTGTTTGGAGCAGCTATGGATGCTGAAAAATATCAAGAAACACTTCATAGGTCTTCACTATTGAAGGATCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGGGAGAGAGGAGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCACTATATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTTGTGACTCATCAAGTTGATTTCCTTCCAGCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCATAGAAGCTGCTCCTTATCACCATTTGTTGAGCTCAAGCCAAGAATTTCAGGATCTTGTGAATGCCCACAGAGAGACTGCTGGCTCTGACCGGCTTGTAGATGTTACTTCTCCGCAGAAACAATCAAATAGTGCTAGAGAAATTAGAAAAACATCTACGGAGCAGAATTATGAAGCATCAAAAGGTGATCAATTGATTAAGCGAGAAGAGAGAGAGAAGGGAGACCAAGGGTTCAAACCATATATACAGTATCTGAATCAGAACAAAGGATATATATACTTCTCTGTGGCTGCTCTTTCTCACCTAACATTTGTGGTTGGCCAAATATTACAAAACTCATGGATGGCCGCTAGTGTTGATAATCCTCAAGTCAGCACTTTGCAATTGATTCTTGTTTACTTGTTGATTGGACTTATTTCAACACTATTCTTGTTGATGAGAAGTCTTTTTGTAGTTGCTTTGGGTCTTCAATCATCAAAGTCTTTATTTTCACAGCTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGAAGGATACTTAGTAGGGTCTCCTCGGATCTCAGCATTGTAGACCTTGATGTCCCATTCGGCTTTGTTTTTGCTGTGGGAGCTACTATGAATTGCTATGCTAATCTAACCGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCGATGATTTATTTTGCAATCCGCCTGCAGAGATATTACTTTGCCTCTGCAAAAGAACTGATGCGGTTGAATGGCACAACAAAATCCTTTGTTGCCAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTGAGAAAAATCTTTATCTAATTGATGTCAATGCGAGCCCTTACTTCCATAGTTTTGCTGCGAATGAGTGGCTGATTCAACGATTAGAAACGGTCAGTGCTGTTGTTCTTGCATCTGCGGCACTGTGCATGGTTGTACTTCCACCCGGAACTTTCTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACATGTCCTTAGTATTTTCAATTCAAAATCAATGCAACATAGCGAATTATATAATATCAGTAGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCTCCAGAAGTAATAGAAGGAAATCGCCCTCCTGGGAATTGGCCAGCGGCTGGTAGAGTACAAATAAATGAATTGCAGATACGTTACAGGCCTGATGCACCACTAGTACTTCGTGGAATCACATGCACATTTGAAGGAGGTCACAAAATTGGTATTGTTGGCAGAACAGGCAGTGGAAAGTCTACTCTTATAGGCGCCTTATTCCGTCTAGTGGAGCCAGCAGGTGGAAAAATCATTGTTGATGGAATAGACATTTGTTCTATTGGACTTCATGACTTGAGGTCACGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTCAGATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTAGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGACAGCTATTCTGTTTGGGGCGTGCTCTTCTCAGGCGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCGTCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACAATTAGGACTGAATTTGCGGATTGTACAGTGATTACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAAGTTCTTGCCATCAGTGATGGGAAACTGGTGGAGTATGATGAACCGATGAACTTGATAAAGAGAGAAGGATCACTCTTTGGGAAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTGA 4440 0.4079 MAGFWSVFCGESGCSEAGKMPGSYDFRLLIDPSTCVNHLLISCFDVLLLIMLVFIMIQKSTLKPSRGLIQVQRYPYFQLVSAIVNGALGLAHLCFGIWVLEETLRKNQTVLPLNWWLLEIFHGLTWLLVSLTISLKLKQLPRAWSGFFSVLIFLVSGIFCGLSLFYAISSRELSLKIASDILSFLGAILLLLCTYKESNHRDTDSEIDESLYAPLNSESNKNDYITYVTPFAKTGFFGRMTFWWLNPLMKMGKEKTLQDEDIPRLREEDRAESCYLLFLDQLNRQKQKDQSSQPSVLRTIILCHWKEILISGFFALLKVVALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFTKNIESLSQRQWYFRCRLIGVKVRSLLTAAIYRKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSLQLCISLVILFRAVGWATIASLVVIVITVLCNTPLAKLQHKFQSKLMVTQDERLKACSEALVNMKVLKLYAWETNFRSSIERLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFLEAPELQSANVTQRCINENKRGSILIKSADFSWEANVSKPTLRNINLKVRPRQKVAVCGEVGSGKSTLLAAILREVPNTQGTIEVHGKFSYVSQTAWIQTGTIRENILFGAAMDAEKYQETLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIEAAPYHHLLSSSQEFQDLVNAHRETAGSDRLVDVTSPQKQSNSAREIRKTSTEQNYEASKGDQLIKREEREKGDQGFKPYIQYLNQNKGYIYFSVAALSHLTFVVGQILQNSWMAASVDNPQVSTLQLILVYLLIGLISTLFLLMRSLFVVALGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGFVFAVGATMNCYANLTVLAVVTWQVLFVSIPMIYFAIRLQRYYFASAKELMRLNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFEKNLYLIDVNASPYFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCNIANYIISVERLNQYMHIPSEAPEVIEGNRPPGNWPAAGRVQINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLIKREGSLFGKLVKEYWSHFQSAESH* 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1326 1479 MobiDBLite consensus disorder prediction 859 894 - -
Gso20g1326 1479 Pfam ABC transporter transmembrane region 917 1168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1326 1479 Pfam ABC transporter transmembrane region 308 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1326 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Gso20g1326 1479 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016021
Gso20g1326 1479 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016021
Gso20g1326 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1326 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
Gso20g1326 1479 SMART AAA_5 651 824 IPR003593 -
Gso20g1326 1479 SMART AAA_5 1259 1451 IPR003593 -
Gso20g1326 1479 SUPERFAMILY ABC transporter transmembrane region 918 1213 IPR036640 GO:0005524|GO:0016021
Gso20g1326 1479 MobiDBLite consensus disorder prediction 859 875 - -
Gso20g1326 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Gso20g1326 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Gso20g1326 1479 Gene3D - 618 853 IPR027417 -
Gso20g1326 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 74 1479 - -
Gso20g1326 1479 CDD ABCC_MRP_domain1 624 824 - -
Gso20g1326 1479 Gene3D - 1217 1468 IPR027417 -
Gso20g1326 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Gso20g1326 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1326 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 74 1479 - -
Gso20g1326 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Gso20g1326 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Gso20g1326 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Gso20g1326 1479 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Gso20g1326 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Gso20g1326 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1460 IPR027417 -
Gso20g1326 1479 MobiDBLite consensus disorder prediction 876 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1326 Gso-Chr20 43298560 43306569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1326 622 869 Calmodulin-binding Proteins AT2G36910 29.963 1.40e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1326 K05666 - gmx:100811468 2875.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1326 20 43298560 43306569 Gso10g2031 10 47325283 47333176 GST
Gso16g1414 16 34118935 34130904 Gso20g1326 20 43298560 43306569 PCT
Gso20g1326 20 43298560 43306569 Gso16g1414 16 34118935 34130904 PCT