Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1320 ATGGCAAATGCTGATTCCTCCCTTATTTGTTATTTTTGGGTGATTCTTGCTCTGGGTCTGTGTTGTTTTAGTGGCTGCATTTCGGGCCAGATTGGTTTGGGCTCGAGGTTATTGGCTAGAGAGGCCCAAACATGGGTTTCTGAAAATGGCACATTTGCTTTGGGGTTCACTCCAGCAGAGACTGATAATCGATTATTTGTGATTGGAATTTGGTTTGCACGGCTTCCAGGAGATCGAACTTTAGTTTGGTCACCCAATAGAGACAATCCGGTATCCCAAGAAGCAGCATTGGAGCTTGACACCACTGGCAACCTTGTTCTCATGGATGGACACATGACAATGTGGACCTCAAACACCTCAGGTGCTGATGTTCAAACAGCAATCATGGCAGAAACTGGCAACTTCATCCTCCACAACTCCAACAACCACTCTGTGTGGCAGAGTTTTTCTCAACCTTCTGACACTCTCCTCCCAAACCAGCTTCTAACAGTGTCTTCTGAACTAACATCATCAAAGTCTTCCTCTCAGGGTGGTTACTATTCTCTCAAAATGCTTCAGCAGCCTACTTCCCTGAGCCTTGCTCTCACTTACAATCTCCCTGAGACTTACCAAGCCTCTGATGAATCATACACCAACTATTCCTATTGGCAAGGCCCTGATATCTCCAATGTGACCGGGGAAGTTATAGCGGTTTTAGACCAAGCCGGGAGCTTTGGAATTGTGTATGGAGACTCATCTGATGGAGCTGTTTATGTGTACAAGAATGATGGTGATGATGCAGGCTTGTCTTCTGCAGTTCACCAATCTGCACCGTTGACTGTTCTCAGGAGACTAACACTGGAAAAGAACGGAAATCTGCGGTTGTATCGATGGGATGAGGTGAATGGTTCGAGGCAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAGTTTGTGGCAATGGAGTTTGTAATTTGGATAGAAGTAAGACAAAAGCCACTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGCAGGGATGGCCAGTGCTTTGAGAATTCATCTCTTGTTGGAAATTGCAATGGCAAGCATGAAAACCTGACATCACAGTTTAGGATTTCAGCGGTGCAGCAAACCAACTACTATTTTTCTGAATTTTCAGTAATAACTAACTATAGTGATATTTCTAATGTGTCAAAATGTGGGGATGCTTGCTTGTCAGATTGTGATTGTGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGGCCATTTTGTTGGGTGTTGAGGAGCTTAAGTTTTGGTGGTTTTGAGGATACTAGCTCAACTTTGTTTGTGAAGGTCAGAGCAAATGGGTCATGGACTTCGGAAGGCCAAGCAGGAGGGTCTAATAGCTCCTCTGATGGAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCTACTGTTCTGAGCATGGTAGTTCTCATTGTTTTGCTGAGTTTATTACTGTATTTCAGTGTTCACAGAAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTGATCTTATCAGGTGCTCCAATGAGTTTCACATACCGCAATTTGCAAATTAGGACATGCAACTTCTCACAACTGCTAGGAACAGGTGGATTTGGGAGTGTATATAAAGGAAGCCTGGGAGATGGTACTCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCTCATGGAGAGAAGGAATTTATCACTGAAGTAAACACTATTGGATCAATGCATCATATGAATTTGGTTCGCCTATGTGGCTATTGTTCAGAGGGATCACATAGGCTTCTCGTTTATGAGTTCATGAAAAATGGATCCTTGGATAAATGGATCTTCCCTTCATATCAAGGTCGAGATAGATTGTTAGATTGGACAACTCGTTTCAATATAGCCATAGCTACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGGGATCGGATAATACATTGTGACATCAAACCGGAAAATATATTGGTAGACGAAAACTTTTGTCCCAAAGTATCTGATTTTGGGCTGGCCAAATTGATGGGAAGGGAGCACTCTCATGTGGTAACAATGGTCAGAGGCACTAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTAAAAGCTGATGTTTACAGCTATGGAATGCTTCTTTTAGAGATCATTGGTGGCAGGAGAAATCTTGACATGTCCTTTGGTGCTGAGGACTTTTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAATAATTAAGGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTAACGAGAGCTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTTTCCATGCGACCAACAATGGGAGAAGTGGTAAGACTGCTGGAAGATTCGATCGACATTAATATGCCACCAATGCCGCAAACAGTTGTAGAATTAATTGAAGAAGGCTTAGACCATGTATACAAAGCTATGAAAAGAGAGTATAATCAGTCCAGCTCATTCACTCTTACCAGCCATCTTACATCTCAAGCCACATGTAGCAATTCCACAATGTCACCAAGATAG 2592 0.4321 MANADSSLICYFWVILALGLCCFSGCISGQIGLGSRLLAREAQTWVSENGTFALGFTPAETDNRLFVIGIWFARLPGDRTLVWSPNRDNPVSQEAALELDTTGNLVLMDGHMTMWTSNTSGADVQTAIMAETGNFILHNSNNHSVWQSFSQPSDTLLPNQLLTVSSELTSSKSSSQGGYYSLKMLQQPTSLSLALTYNLPETYQASDESYTNYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGDSSDGAVYVYKNDGDDAGLSSAVHQSAPLTVLRRLTLEKNGNLRLYRWDEVNGSRQWVPQWAAVSNPCDIAGVCGNGVCNLDRSKTKATCTCLPGTSKVGRDGQCFENSSLVGNCNGKHENLTSQFRISAVQQTNYYFSEFSVITNYSDISNVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANGSWTSEGQAGGSNSSSDGMGSAKEKAVIIPTVLSMVVLIVLLSLLLYFSVHRKRTLKREMESSLILSGAPMSFTYRNLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRDRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGAEDFFYPGWAYKEMTNGSIIKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGEVVRLLEDSIDINMPPMPQTVVELIEEGLDHVYKAMKREYNQSSSFTLTSHLTSQATCSNSTMSPR* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1320 863 CDD B_lectin 43 152 IPR001480 -
Gso20g1320 863 CDD STKc_IRAK 537 804 - -
Gso20g1320 863 SUPERFAMILY Protein kinase-like (PK-like) 509 803 IPR011009 -
Gso20g1320 863 Gene3D Transferase(Phosphotransferase) domain 1 607 820 - -
Gso20g1320 863 Gene3D Phosphorylase Kinase; domain 1 495 606 - -
Gso20g1320 863 ProSiteProfiles Protein kinase domain profile. 531 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1320 863 SMART blect_4 36 152 IPR001480 -
Gso20g1320 863 PIRSF SRK 2 859 IPR024171 GO:0004674
Gso20g1320 863 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 14 863 - -
Gso20g1320 863 Pfam S-locus glycoprotein domain 267 338 IPR000858 GO:0048544
Gso20g1320 863 PANTHER OS07G0415500 PROTEIN 14 863 - -
Gso20g1320 863 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 166 IPR036426 -
Gso20g1320 863 Pfam D-mannose binding lectin 80 167 IPR001480 -
Gso20g1320 863 Pfam Protein kinase domain 534 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1320 863 SMART serkin_6 531 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1320 863 ProSitePatterns Protein kinases ATP-binding region signature. 537 560 IPR017441 GO:0005524
Gso20g1320 863 Gene3D - 33 151 IPR036426 -
Gso20g1320 863 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Gso20g1320 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1320 Gso-Chr20 43233420 43238890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1320 514 813 Receptor kinase-like Gene Family AT5G20050 45.541 1.40e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso20g1320 Pkinase 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1320 - - gmx:100794281 1706.42