Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1317 ATGGAGCAGAAACACGTGTTGTTTTCAGCATTGAGTGTTGGGGTTGGGCTGGGTGTGGGACTTGGATTGAGCACAGGACAAGCTGTTCAAAAATGGGTTGTCGGGAGTTGTGAGTCTGATGAGATTTCTGGGGAGCAAATTGTGTTGGAGCTCAACAACAGAGTCATTGATGGGAAGAACAGCAAAGTCACATTTGATGACTTTCCATATTACTTAAGTGAAAGAATCCGATTTGTGTTAACAAGTACTGGATATGTTTATTTAAAACAAGACTTTTCCAAGCACTTGAGGAACCTTCGTCCAGCAAGCAGAGCTATTTTGCTTTCTGGACCTGCAGAACCTTATCAGCAAAATCTTGCCCGAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTGCTAGACATTACTGACTTCTCGTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGAACCAAGTTTTCAAAGGTCCATATCTGAGGTGACATTGGAGCGAGTGTCTGGTCTGTTTGGTTCCTTGTCAGTCCTTCCTTCAACAGGCAGAACTAGAGGTACACTACATCGTCAGAGTAGTGGAATTGAAAATTCCAGCAATCCTCCAAAGCTCCGTAGGAATGCCTCTACTGCATGTGATACAATTAGCACTCCCCAATATGGTCCTTCAGATCCAGCTCCTTTGAAGTGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTATAAGGTCTTGGTTTCTCTCTCAGAAACCAGTTCTGTTATTTTATATATCAAGGATGTTGAGAAGCTCTTTGTTCGATCAACAAGGCTACACAATTTGTTCCAAAAGTTAATTAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCAGATCTTTGATTCTGAAGATGATTGTGCAGAAATTGATGAAAAGCTTACTATGTTATTCCCTTACAACATTGACATCAAACCACCTCAAGATGAGACCCATCTTGCAAGCTGGAGAACCAAACTGAAAAAAGACATGGAAACTAGTCTGTTTCAAGATAGCAGGAACCATATTGCTGAAGTACTTGCAGCAAATGACGTTGATTGTGATGACTTGGAAAAAGTAAGCAATGCTGACACTATGCTACTCAGTAATTGCATTGAAGAGATTGTGGCGTCTGCAATTTCTCACCACCTGATGGAGACTAAACATCCAGAATACCGAAATAGAAAACTAGTTATATCACACAAGAGTTTGTCCCATGTATTGAATCTTTTCCAGGAAAGTGAAAGTAATCCGGAGAATAAAGATTCAAACAAGGAGGATGCTCTTGCAACAAAGAAAGATGGTGACAATGAGTTTGAGAAGCATATGAGAGAAGAGGTTGTGCCTGCAAATGAGATAGGGGTTACATTTGAAGATATTGGTGCATTGGATGATATTAAAGAATTACTTCAAGATGTGGTCATGCTTCCCCTCAGAAGACCAGACTTATTCAAAGGTGGACTTCTGAAGCCTTATAAAGGAATATTGCTTTTCGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATCTCTAAAATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCATTAGCAGCAAAAGTTGCTCCAACTATTATTTTTATTGATGAAGTTGATAGCATGCTTGGGAAGCGGACTAAATATGGGGAACATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGCCCACTGGGATGGGCTATTGACAGAACCCAATGAACGAATTCTGGTTCTTGCCGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATAAGACGGTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAAACTATCCTAGCTAAGGAAAAATATGAAAATATAGACTTTAAAGAGCTTTCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACAGCTGCTGCTTATAGACCTGTTAGAGAGGTACTTCAACAGGACAGGTTGAAGGAAAAGGAAAAGAAGAAAACGGAGGTAGAAGTTCAAAGATCAGAAGATGCTTCTGATGCTAAAGGAGATAAAGATGAAGTGACTACTTTAAGGTGTTTAAACGTAGAAGACATTAGACACTGTAGTCAGGAAAAGAAGAAAACGGAGGCAGAAGTTCAAAGCTCACAAAATGCTTCTGATGCAAAAGGTGATAAAGATGACCAAGTGATGACTTTGAGGCCTTTAAACATGGAAGACATGAGACTGGCAAAGAGTCAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAGTGAGCTGAAGGAGTGGAATGAATTGTTTGGAGAAGGAGGTTCAAGGAAGAAGCAGCAGCTTACTTATTTCCTTTAA 2463 0.4048 MEQKHVLFSALSVGVGLGVGLGLSTGQAVQKWVVGSCESDEISGEQIVLELNNRVIDGKNSKVTFDDFPYYLSERIRFVLTSTGYVYLKQDFSKHLRNLRPASRAILLSGPAEPYQQNLARALAHYFESKLLLLDITDFSLEMQRKYGCPRKEPSFQRSISEVTLERVSGLFGSLSVLPSTGRTRGTLHRQSSGIENSSNPPKLRRNASTACDTISTPQYGPSDPAPLKCTSGFCFDEKLFVQSLYKVLVSLSETSSVILYIKDVEKLFVRSTRLHNLFQKLIKKLSGSVLILGSQIFDSEDDCAEIDEKLTMLFPYNIDIKPPQDETHLASWRTKLKKDMETSLFQDSRNHIAEVLAANDVDCDDLEKVSNADTMLLSNCIEEIVASAISHHLMETKHPEYRNRKLVISHKSLSHVLNLFQESESNPENKDSNKEDALATKKDGDNEFEKHMREEVVPANEIGVTFEDIGALDDIKELLQDVVMLPLRRPDLFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISKITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGKRTKYGEHEAMRKIKNEFMAHWDGLLTEPNERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTILAKEKYENIDFKELSTMTEGYTGSDLKNLCTAAAYRPVREVLQQDRLKEKEKKKTEVEVQRSEDASDAKGDKDEVTTLRCLNVEDIRHCSQEKKKTEAEVQSSQNASDAKGDKDDQVMTLRPLNMEDMRLAKSQVAASFAAEGSIMSELKEWNELFGEGGSRKKQQLTYFL* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1317 820 MobiDBLite consensus disorder prediction 422 443 - -
Gso20g1317 820 ProSitePatterns AAA-protein family signature. 608 627 IPR003960 GO:0005524|GO:0016887
Gso20g1317 820 MobiDBLite consensus disorder prediction 428 443 - -
Gso20g1317 820 Pfam ATPase family associated with various cellular activities (AAA) 505 635 IPR003959 GO:0005524|GO:0016887
Gso20g1317 820 MobiDBLite consensus disorder prediction 695 721 - -
Gso20g1317 820 Gene3D - 637 711 - -
Gso20g1317 820 MobiDBLite consensus disorder prediction 740 764 - -
Gso20g1317 820 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 443 739 - -
Gso20g1317 820 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 436 - -
Gso20g1317 820 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 741 820 - -
Gso20g1317 820 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 436 - -
Gso20g1317 820 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 443 739 - -
Gso20g1317 820 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 741 820 - -
Gso20g1317 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 692 IPR027417 -
Gso20g1317 820 CDD AAA 499 636 - -
Gso20g1317 820 Coils Coil 735 755 - -
Gso20g1317 820 SMART AAA_5 501 638 IPR003593 -
Gso20g1317 820 Gene3D - 464 636 IPR027417 -
Gso20g1317 820 MobiDBLite consensus disorder prediction 183 208 - -
Gso20g1317 820 Pfam AAA+ lid domain 657 697 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1317 Gso-Chr20 43197537 43205262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1317 453 712 Calmodulin-binding Proteins AT3G56690 37.218 3.94e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1317 - - gmx:100793760 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1317 20 43197537 43205262 Gso20g1317 20 43197537 43205262 ECH
Gso20g1317 20 43197537 43205262 Gso10g2049 10 47511406 47519157 GST
Gso16g1429 16 34331147 34333063 Gso20g1317 20 43197537 43205262 PCT
Gso20g1317 20 43197537 43205262 Gso16g1422 16 34220877 34243777 PCT
Gso20g1317 20 43197537 43205262 Gso9g1039 9 29624943 29632356 PCT