Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1312 ATGGCTGAGGACTGGGATCTCTTTGCCATCGTGAGAAGCTGCCAATCAGCCACCACAACAATTCCACAAACCACCACCAATAATACTTCCTCTCCCTTGATCACTTCCACTGTAAAGGAAGAAAACTATGATGGATTTTCCTTTCCCAATATAGTGCAACCCATAACCAATGAGTTTCAAGCGCTACACCAACTGTTCACACCCTTTAACCCCACCACCAACACCACTAACACTAGTGCTTCTGGCATCAATCCCAATTCCCCTTATTTTGCAGAACAGGAAAGCCAGCAAATTAGTGAGCACCTTCCTATTTGGCCTCATTTCGTGCCAGAACACTCTTCCACTCCCAGTTTCAGTAGATTCCATGACCATCAACAACAACAGCAACAGATCAATCAACTACAGGCACTTCAGAAACACGAATTTCAACTGCCCCAGAACAATTCCCCCACAGTTTCACCAAACGCACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTATGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCATATCCAAGGAATTACTATAGGTGCAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGTAACACTGAACCCGACATGTTCATCGTTACGTACTCCGGAGACCATTCCCATCCCCGGCCAACCCACCGGAATTCGCTCGCCGGAAGTACCCGGAATAAGATTCCGGCGACCAATCCGCTACCGTCACCTGGGTCACTCTCCTCCTTCCAAGCCACGCCCTTTTCTTCTTCTTCTTCTTCGCCACCACACTCTCCGACGTCGCCGTCGGAGGAGCCACCGGAAACCGGCGATTTAGAACCCGACCCGGATATGGAAACCGATGGGGACGATGACGGTGACATTCAAATACAATAA 966 0.4793 MAEDWDLFAIVRSCQSATTTIPQTTTNNTSSPLITSTVKEENYDGFSFPNIVQPITNEFQALHQLFTPFNPTTNTTNTSASGINPNSPYFAEQESQQISEHLPIWPHFVPEHSSTPSFSRFHDHQQQQQQINQLQALQKHEFQLPQNNSPTVSPNAQPQTPKSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTEPDMFIVTYSGDHSHPRPTHRNSLAGSTRNKIPATNPLPSPGSLSSFQATPFSSSSSSPPHSPTSPSEEPPETGDLEPDPDMETDGDDDGDIQIQ* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1312 321 Gene3D WRKY domain 166 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso20g1312 321 Pfam WRKY DNA -binding domain 185 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g1312 321 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 299 IPR044810 GO:0003700
Gso20g1312 321 MobiDBLite consensus disorder prediction 234 321 - -
Gso20g1312 321 ProSiteProfiles WRKY domain profile. 178 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g1312 321 MobiDBLite consensus disorder prediction 298 321 - -
Gso20g1312 321 SMART WRKY_cls 183 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso20g1312 321 MobiDBLite consensus disorder prediction 145 163 - -
Gso20g1312 321 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 299 - -
Gso20g1312 321 MobiDBLite consensus disorder prediction 145 173 - -
Gso20g1312 321 MobiDBLite consensus disorder prediction 246 288 - -
Gso20g1312 321 SUPERFAMILY WRKY DNA-binding domain 178 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1312 Gso-Chr20 43136402 43138536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1312 162 315 WRKY Transcription Factor Family AT5G52830 62.821 1.05e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso20g1312 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1312 K13425 - gmx:100792164 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1312 20 43136402 43138536 Gso10g2057 10 47580193 47582123 GST
Gso16g1452 16 34768087 34769942 Gso20g1312 20 43136402 43138536 PCT
Gso9g1060 9 30694597 30696523 Gso20g1312 20 43136402 43138536 PCT
Gso20g1312 20 43136402 43138536 Gso16g1452 16 34768087 34769942 PCT
Gso20g1312 20 43136402 43138536 Gso9g1060 9 30694597 30696523 PCT