Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso20g1312 | ATGGCTGAGGACTGGGATCTCTTTGCCATCGTGAGAAGCTGCCAATCAGCCACCACAACAATTCCACAAACCACCACCAATAATACTTCCTCTCCCTTGATCACTTCCACTGTAAAGGAAGAAAACTATGATGGATTTTCCTTTCCCAATATAGTGCAACCCATAACCAATGAGTTTCAAGCGCTACACCAACTGTTCACACCCTTTAACCCCACCACCAACACCACTAACACTAGTGCTTCTGGCATCAATCCCAATTCCCCTTATTTTGCAGAACAGGAAAGCCAGCAAATTAGTGAGCACCTTCCTATTTGGCCTCATTTCGTGCCAGAACACTCTTCCACTCCCAGTTTCAGTAGATTCCATGACCATCAACAACAACAGCAACAGATCAATCAACTACAGGCACTTCAGAAACACGAATTTCAACTGCCCCAGAACAATTCCCCCACAGTTTCACCAAACGCACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTATGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCATATCCAAGGAATTACTATAGGTGCAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGTAACACTGAACCCGACATGTTCATCGTTACGTACTCCGGAGACCATTCCCATCCCCGGCCAACCCACCGGAATTCGCTCGCCGGAAGTACCCGGAATAAGATTCCGGCGACCAATCCGCTACCGTCACCTGGGTCACTCTCCTCCTTCCAAGCCACGCCCTTTTCTTCTTCTTCTTCTTCGCCACCACACTCTCCGACGTCGCCGTCGGAGGAGCCACCGGAAACCGGCGATTTAGAACCCGACCCGGATATGGAAACCGATGGGGACGATGACGGTGACATTCAAATACAATAA | 966 | 0.4793 | MAEDWDLFAIVRSCQSATTTIPQTTTNNTSSPLITSTVKEENYDGFSFPNIVQPITNEFQALHQLFTPFNPTTNTTNTSASGINPNSPYFAEQESQQISEHLPIWPHFVPEHSSTPSFSRFHDHQQQQQQINQLQALQKHEFQLPQNNSPTVSPNAQPQTPKSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTEPDMFIVTYSGDHSHPRPTHRNSLAGSTRNKIPATNPLPSPGSLSSFQATPFSSSSSSPPHSPTSPSEEPPETGDLEPDPDMETDGDDDGDIQIQ* | 322 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso20g1312 | 321 | Gene3D | WRKY domain | 166 | 236 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Gso20g1312 | 321 | Pfam | WRKY DNA -binding domain | 185 | 242 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso20g1312 | 321 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 3 | 299 | IPR044810 | GO:0003700 | |
Gso20g1312 | 321 | MobiDBLite | consensus disorder prediction | 234 | 321 | - | - | |
Gso20g1312 | 321 | ProSiteProfiles | WRKY domain profile. | 178 | 244 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso20g1312 | 321 | MobiDBLite | consensus disorder prediction | 298 | 321 | - | - | |
Gso20g1312 | 321 | SMART | WRKY_cls | 183 | 243 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso20g1312 | 321 | MobiDBLite | consensus disorder prediction | 145 | 163 | - | - | |
Gso20g1312 | 321 | PANTHER | WRKY TRANSCRIPTION FACTOR 27-RELATED | 3 | 299 | - | - | |
Gso20g1312 | 321 | MobiDBLite | consensus disorder prediction | 145 | 173 | - | - | |
Gso20g1312 | 321 | MobiDBLite | consensus disorder prediction | 246 | 288 | - | - | |
Gso20g1312 | 321 | SUPERFAMILY | WRKY DNA-binding domain | 178 | 244 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso20g1312 | Gso-Chr20 | 43136402 | 43138536 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso20g1312 | 162 | 315 | WRKY Transcription Factor Family | AT5G52830 | 62.821 | 1.05e-61 | 198 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Gso20g1312 | WRKY | 1.2e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso20g1312 | K13425 | - | gmx:100792164 | 536.184 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso20g1312 | 20 | 43136402 | 43138536 | Gso10g2057 | 10 | 47580193 | 47582123 | GST | |
Gso16g1452 | 16 | 34768087 | 34769942 | Gso20g1312 | 20 | 43136402 | 43138536 | PCT | |
Gso9g1060 | 9 | 30694597 | 30696523 | Gso20g1312 | 20 | 43136402 | 43138536 | PCT | |
Gso20g1312 | 20 | 43136402 | 43138536 | Gso16g1452 | 16 | 34768087 | 34769942 | PCT | |
Gso20g1312 | 20 | 43136402 | 43138536 | Gso9g1060 | 9 | 30694597 | 30696523 | PCT |