Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1307 ATGGCGGCAGGACTCTCCACCGCCGCAAACTTAAAGCCCTACAATCTCCTCCAACCCCCAATCCCTATTTCTAAACCAACCCCAACACTCTTCTTCAACCCCTTAAGATGTTTCCGTCGCAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAAGAATGAGTGGCTTCACCGTTTGCGTCCTCACGGAGGATCCCAAACAGACAAAAAAGGATGAACAAGAAGAACAAGTGAATCCTCAAGTTGTGTCGGCACGAGTGGCAGAGAAATTGGCGAGAAAGAAGTCCCAGAGGTTCACCTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCCACAAGGGTCTGGTCCCTGGCCTCTGTTTTGGTGCAGGCCTTGGAATCACGGTGTTTGGGATGGCCTACATGTTTGTCCACGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTTAGAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAGGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATGAGGTCCGGTTCATGA 906 0.4956 MAAGLSTAANLKPYNLLQPPIPISKPTPTLFFNPLRCFRRSTILRVRPRRRRMSGFTVCVLTEDPKQTKKDEQEEQVNPQVVSARVAEKLARKKSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDVPWSEMLGTFSLSVGAAVAMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIVLLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGLEELEKEISRRMRSGS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1307 301 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 7 298 IPR045019 GO:0016491
Gso20g1307 301 Pfam Fatty acid hydroxylase 147 274 IPR006694 GO:0005506|GO:0008610|GO:0016491
Gso20g1307 301 PANTHER BETA-CAROTENE HYDROXYLASE 7 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1307 Gso-Chr20 43087999 43090700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1307 1 217 Chloroplast and Mitochondria Gene Families AT4G25700 59.276 5.16e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1307 K15746 - gmx:100802778 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1307 20 43087999 43090700 Gso10g2067 10 47649139 47651411 GST
Gso16g1472 16 34900017 34902708 Gso20g1307 20 43087999 43090700 PCT
Gso9g1090 9 31266305 31268964 Gso20g1307 20 43087999 43090700 PCT
Gso20g1307 20 43087999 43090700 Gso16g1472 16 34900017 34902708 PCT
Gso20g1307 20 43087999 43090700 Gso9g1090 9 31266305 31268964 PCT