Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1304 ATGAGTTTTCCTCAGAGCCTGATACTCACGTCACACTCTTCAAGGAACCAAACCTCTCTCTCTTCAATGAACACTCAAAACATGATACCCTTTATCCTTCTTCTTTTCATACCTTTCTCAGTTTCATTCTCTACCACAGATAACTTTCTTCTTAGTTGTGGATCACACAGCAATGCTTCCCTCTTCAACCGTGTCTTCGTGGGAGATTCCACTGACTCAGGCTCCACTTTTCTATCTTCAGGTGATTCCATTTCACTCACATACCAAAAGCCACCTCAGAATTTGCCTACTTTATACCACACAGCCAGACTTTTCAGAAGCACTGGGAGGTACAGGTTCAACATGAAGAAAAACGGCACCCACTTGGTACGTTTTCATTTCTCCCCCTTCAAGGCTCAAAGTTTTGATCTTAAATCAGCAAAATTTAACGTCTCTGTTAACGGGGTTTCGGTGTTGAGCAATTTCCAACCACCTAATGATGTGTTGCTCAAAGAGTTTATTTTGAAGATTGTGTCAAACGTGCTTGAGATTTTGTTTAGGCCTGTTGGTGACTCAGGTTTTGCCTTTGTCAATGCCTTGGAGGTGTTTACTGCCCCTGTGGATTTTGTTATAGATTTTGGAGCCAGGTTGGTTGGTCCTTCTGGGGTGGAGGAGTACAGAAGCCTTTCATCTCAGGTTTTGGAAACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCCTTCAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATCTGGTGTTTAAGGGTGCTGCAAAGCCTGCAGTGAGCACTCACACACCAAATTACCAGAAGGGAGGTGCAACTAGAGAGATTGCACCTGAAAATGTTTACATGACAGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCTTCAAGGTTCAACATAACCTGGAACTTCCCTGTGTCTCCTGGTGGTGTTCCACACTTGGTTAGGTTGCATTTTTGTGATATTGTTAGTCCTGCTCTCAACTTGCTCTACTTTGATGTGTACATCAATGGGTACATTGCATACAAGGATCTTGATTTGTCAGCCCTTACAATCCACACACTTGCATCACCTGTCTATGTGGATTTTGTTACAAATTCAGATGACACAGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGAGCTGAGCAGTTCCATAAGGATGAATGCCATATTGAATGGTGCAGAGATAATGAAGATGGTCAATGATGTCGGTACTAATGTTGTGCATAGGAGGAAGAATCTGTGGGTGTTGGTGGGTTCAATTGCTGGAGGAATTGTTGTCTTGTTTTTAGTTGTAACTGCTTTTCTACTTGGTACCAAATGCAGGAACAAGAAACCGAAACAAAGGACAGTAGAAAGTGTTGGATGGACACCTTTGAGTATGTTTGGAGGGAGCTCCCTTAGTAGAAGCTCTGAGCCTGGTTCTCATGGACTTCTTGGCATGAAGATCCCTTTTGCTGAAATACAATCAGCAACAAACAACTTTGATAGAAATCTGATTATAGGGTCTGGTGGATTTGGTATGGTCTACAAGGGAGAACTGAGAGACAATGTGAAGGTTGCTGTCAAGAGAGGCATGCCAGGGTCCAGACAAGGCCTTCCTGAGTTCCAGACTGAGATAACAGTTCTGTCCAAAATTCGCCATCGCCACCTCGTTTCACTAGTTGGTTTCTGTGAAGAGAATTCAGAAATGATACTTGTCTATGAGTATGTTGAAAAGGGTCCACTGAAGAAGCATTTATATGGTTCATCACTACAAACACCTCTCTCTTGGAAGCAGCGTCTTGAAATATGCATTGGTGCGGCTAGAGGCCTTCACTATCTTCACACCGGTTTTGCTCAAGGAATCATCCACCGTGACATTAAGTCAACCAACATATTGCTTGATGAAAACTATGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGGTCAGGGCCATGCATCAATGAAACACATGTGAGTACTAATGTGAAAGGTAGCTTTGGTTATCTTGATCCCGAGTATTACCGGAGGCAGCAGCTTACAGATAAGTCAGATGTTTACTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGGAAGACCTGCTGTTGATCCACAACTTGCAAGAGAACAGGTGAATTTGGCAGAATGGGCACTTGAATGGCTGCAAAAGGGTATGCTGGAGCAAATTGTTGACCCTCATCTTGTTGGACAGATTCAACAAAGCTCCTTAAAGAAATTTTGTGAAACTGCAGAGAAATGTTTGGCCGAATACGGTGTTGACAGGCCAGCCATGGGTGATGTGTTGTGGAATTTGGAATATGCACTTCAGCTCCAAGAAAGTGAGCCACATGCCAATAGCAGTGCTAGGGAATCTGTGAGTGTGACAAATGCAGTTATTCCTGGAAATCCTTCTACCAACAGAAGGACAGAGAGGGATTATTATAACTGTTCTTCAGATGTAAGTACTAGCCAAGTGTTTTCCCAGTTAATGAACAATGAAGGCAGATAG 2523 0.4304 MSFPQSLILTSHSSRNQTSLSSMNTQNMIPFILLLFIPFSVSFSTTDNFLLSCGSHSNASLFNRVFVGDSTDSGSTFLSSGDSISLTYQKPPQNLPTLYHTARLFRSTGRYRFNMKKNGTHLVRFHFSPFKAQSFDLKSAKFNVSVNGVSVLSNFQPPNDVLLKEFILKIVSNVLEILFRPVGDSGFAFVNALEVFTAPVDFVIDFGARLVGPSGVEEYRSLSSQVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKGAAKPAVSTHTPNYQKGGATREIAPENVYMTAQQMNRENSSLASRFNITWNFPVSPGGVPHLVRLHFCDIVSPALNLLYFDVYINGYIAYKDLDLSALTIHTLASPVYVDFVTNSDDTGFVQVSVGPSELSSSIRMNAILNGAEIMKMVNDVGTNVVHRRKNLWVLVGSIAGGIVVLFLVVTAFLLGTKCRNKKPKQRTVESVGWTPLSMFGGSSLSRSSEPGSHGLLGMKIPFAEIQSATNNFDRNLIIGSGGFGMVYKGELRDNVKVAVKRGMPGSRQGLPEFQTEITVLSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKKHLYGSSLQTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCINETHVSTNVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWALEWLQKGMLEQIVDPHLVGQIQQSSLKKFCETAEKCLAEYGVDRPAMGDVLWNLEYALQLQESEPHANSSARESVSVTNAVIPGNPSTNRRTERDYYNCSSDVSTSQVFSQLMNNEGR* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1304 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Gso20g1304 840 PANTHER OS07G0166700 PROTEIN 37 791 IPR045272 GO:0004714|GO:0006468
Gso20g1304 840 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Gso20g1304 840 SMART serkin_6 505 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1304 840 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 37 791 - -
Gso20g1304 840 Gene3D - 226 411 - -
Gso20g1304 840 Gene3D - 48 201 - -
Gso20g1304 840 SUPERFAMILY Protein kinase-like (PK-like) 492 778 IPR011009 -
Gso20g1304 840 Gene3D Transferase(Phosphotransferase) domain 1 581 803 - -
Gso20g1304 840 Gene3D Phosphorylase Kinase; domain 1 478 580 - -
Gso20g1304 840 CDD STKc_IRAK 511 777 - -
Gso20g1304 840 ProSiteProfiles Protein kinase domain profile. 505 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1304 840 MobiDBLite consensus disorder prediction 787 815 - -
Gso20g1304 840 Pfam Malectin-like domain 51 409 IPR024788 -
Gso20g1304 840 Pfam Protein tyrosine and serine/threonine kinase 510 706 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1304 Gso-Chr20 43068801 43072008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1304 23 840 Receptor kinase-like Gene Family AT3G46290 48.288 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso20g1304 Malectin_like 7.1e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1304 - - gmx:100801169 1658.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1304 20 43068801 43072008 Gso10g2070 10 47666810 47670067 GST
Gso16g1477 16 34940735 34943892 Gso20g1304 20 43068801 43072008 PCT
Gso9g1094 9 31403475 31406348 Gso20g1304 20 43068801 43072008 PCT
Gso20g1304 20 43068801 43072008 Gso16g1477 16 34940735 34943892 PCT
Gso20g1304 20 43068801 43072008 Gso9g1094 9 31403475 31406348 PCT