Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1302 ATGTCGTCACCGAGGTTCCCAGGTGGTGGAGCCTCCGATTTCTACGGCGGAGCAGGAGGATTTCCCAGTCAGTTCACGGCGGTTCAACCCACCATGAACAACCACTCCGCCACCACACCCCGCCCTCTCTACCGATCCCAACCTTCAATTCTGCTTAATCCCTCGTCCCACATCGCCCAACACCAACCATCCCCTCTCATCGGGAAACGCACCCTCGCCGAATTCCAAACCCACAACCTCAACAGCAGCAACAACAACAACAATAACCCACTCCTTTCAAACTATCTACTTCGTTCTGTGAAGCCCAGAACTTTCCAACACACAGAATTATCCACCTTTCCGTCAAATCGTTACGGCCTTCCCCTTCTCCACCACCTTCGCCCTAACGCCGTTAACGCGCAACAACAACAACCGGTTACGAATTCGATCCTCCCCAACACAAATTATTTCCCTCCGGTTCGCAGCAGACTAACCGCACCCCACGAACTGGAGAAGAACTCAATAGACCGCCGCCTCCAGGAGTTGGAAAAGCAGCTTCTAGAAGACAATGAAGACGAACAAGGCGACGCCGTTTCGGTCATTACCACCACCACCACCACTTCCGAATGGTCACACACAATACAAAACCTAATCACTCCGCAGAAACCCACGTCTTCGTCTCCCACTTCCTCTACGACGTCCTCCAACTCCTCCGTGGAATCCACCAGTTCCAAACAGTCCCTAACGGAGGCCGCGATCGCAATTTCAGAAGGCAGGTTCGATACCGCGACGGAGATCCTAACCCGATTATTGCAGAATTCGGATCAACGCTTCATCAATTGCATGGTTTCCGCGCTCAAATCGCGGATGAATCACGTCGAGTGTCCACCACCGGTAGCGGAATTGTTCAGCATAGAACACGCCGAGTCAACTCAGTTACTATTCGAACACTCGCTCTTCTTCAAGGTCGCGCGCATGGTCGCCAACATCGCAATCCTCGAATCCGCATTAACCGAGAACGGGAAGCTGTGCGTGCTGGATTTCGATATCGGCGACGGGAACCAATACGTGAGCCTTCTCCACGAGCTTTCGGCGCGGCGGAAGGGAGCTCCGTCCGCCGTGAAGATCGTCGCGGTGGTGGAGAACGGCGCCGACGAGAGGCTGAACAGCGTGGGCTTGTTGCTGGGGAGACACGCGGAGAAGCTAGGGATTGGTTTCGAATTCAAAGTGCTGATTCGGAGAATCGCCGAGTTGACTCGCGAGTCGCTGGATTGCGACGCGGACGAGGCGCTGGCGGTGAACTTTGCGTACAAGCTTTATAGAATGCCTGACGAGAGCGTCTCCACGGAGAACCCACGCGACGAGCTTCTGCGGCGCGTGAAGGCACTCGCGCCGCGCGTGGTGACGCTAGTGGAGCAGGAGGCGAACGCCAACACGGCGCCGTTCGTGGCGCGCGTGTCGGAGTTGTGCGCTTATTACGGCGCGCTGTTTGACTCGCTCGAGTCGACGATGGCGCGAGAGAACTCGGCGCGAGTTAGGATCGAGGAGGGACTGAGTCGGAAGCTGGGGAACTCGGTGGCGTGCGAAGGAAGGAACCGCGTGGAACGGTGCGAGGTGTTTGGGAAGTGGCGAGCGCGTATGAGCATGGCTGGGTTCATGTTGAAGCCGCTGAGTCAGCGAGTCGCTGAGTCGATCAAAGCGCGACTCGGTGGCGCTGGGAACCGAGTCGCGGTAAAAGTAGAGAACGGTGGGATTTGCTTTGGCTGGATGGGAAGAACTCTCACCGTCGCATCTGCTTGGTGTTAA 1785 0.5641 MSSPRFPGGGASDFYGGAGGFPSQFTAVQPTMNNHSATTPRPLYRSQPSILLNPSSHIAQHQPSPLIGKRTLAEFQTHNLNSSNNNNNNPLLSNYLLRSVKPRTFQHTELSTFPSNRYGLPLLHHLRPNAVNAQQQQPVTNSILPNTNYFPPVRSRLTAPHELEKNSIDRRLQELEKQLLEDNEDEQGDAVSVITTTTTTSEWSHTIQNLITPQKPTSSSPTSSTTSSNSSVESTSSKQSLTEAAIAISEGRFDTATEILTRLLQNSDQRFINCMVSALKSRMNHVECPPPVAELFSIEHAESTQLLFEHSLFFKVARMVANIAILESALTENGKLCVLDFDIGDGNQYVSLLHELSARRKGAPSAVKIVAVVENGADERLNSVGLLLGRHAEKLGIGFEFKVLIRRIAELTRESLDCDADEALAVNFAYKLYRMPDESVSTENPRDELLRRVKALAPRVVTLVEQEANANTAPFVARVSELCAYYGALFDSLESTMARENSARVRIEEGLSRKLGNSVACEGRNRVERCEVFGKWRARMSMAGFMLKPLSQRVAESIKARLGGAGNRVAVKVENGGICFGWMGRTLTVASAWC* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1302 594 ProSiteProfiles GRAS family profile. 228 594 IPR005202 -
Gso20g1302 594 MobiDBLite consensus disorder prediction 204 236 - -
Gso20g1302 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 594 IPR005202 -
Gso20g1302 594 Coils Coil 165 185 - -
Gso20g1302 594 PANTHER SCARECROW-LIKE PROTEIN 8 61 594 IPR030013 -
Gso20g1302 594 Pfam GRAS domain family 238 593 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1302 Gso-Chr20 43045622 43047811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1302 31 593 GRAS Transcription Factor Family AT5G52510 45.997 1.09e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso20g1302 GRAS 3.6e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1302 - - gmx:100800097 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1302 20 43045622 43047811 Gso10g2074 10 47710312 47712441 GST
Gso16g1480 16 34967992 34970388 Gso20g1302 20 43045622 43047811 PCT
Gso9g1098 9 31479514 31481954 Gso20g1302 20 43045622 43047811 PCT
Gso20g1302 20 43045622 43047811 Gso16g1480 16 34967992 34970388 PCT
Gso20g1302 20 43045622 43047811 Gso9g1098 9 31479514 31481954 PCT